RNA id: AMCG00016868


Basic Information

Item Value
RNA id AMCG00016868
length 1245
RNA type mRNA
GC content 0.56
exon number 1
gene id AMCG00016868
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32921005 ~ 32922249 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAGTGAACCTGCTGACTTTCTTGGCGATGCTCCTGGCCATGCCCTCAGGTCTTTCAGCTTATGAAGCCATACAGGAAGATGAGGATATCTTTGCCAGGAGGCCCTGCCCTGCATTCTTGATGTTTGACAATGCTGCTTACGTTAGTGATATGACCATAGAGCTCCCCTGCCACTGCAAACCAGAGGTTGTGCCCTCGGTGGTGTGGTACTACCAGAAACAGCTGGGGGTCAAGGACACGAGAGTCCTGACGGACTTCAACGGGACCAAGGTGGTGGACTCTGCACAGGTGGGAAGGGGGTTGGACATCCGCAGCCGCTTCTCAATCCGTCTCTTCAGCCTCCTGATCTTCCAGTCGCAAGCGGCTGACTCAGGCCACTACATCTGTGGGACGTCCACTGGGGAGTTCTTCTACGGCTATGATGTGGACATCCAGGAAGTGGGCGAGGTGTCTTTTTCCCTTGAACCCCAATCGCTGGGGCCGCCTGGGGATGCTGGGAGGATGCCACACTACCGGGTCTTCACCAGTTTCTGGCCCTGGTCTGTGTGTGACCGCTGTGGCATCAGGGGGGAGCAGACACGCGTGGGGCTGTGCTATCTGGAGAGCCCCTACCTCTACAGCCGCTACAGGCTTCAGCCCCCTGGAGTGGCGTCCTGTGGCTCGGCTTCTGTGCCCCAGCGCTTCAAGAAACATCTGCGGGAGAAGAGGGCGGAGCTCGCAGTCCGTAGCTGCATCACCAATTGCCCTCCGGAGCCCACGCTGCCTCCTGAGGAGAAATCCTTCTTAGACTTCCTGGGCTCCAGATCTGATGCTCCTAAACTCGTTGTCCAGTACTACAGTCACCCAGAGGGCCGCCCTCTCGTCCTGGCCTGCTCTGGAGCTCAAGCCAACAAAGCCGTCGCTTGGGATAAAGATCAGCTGCGGCTCTACCGGGCCCAGTACATGGAAGGAGTAAACAAAACGGCCCGGATGTACATCGATGCCAGCCAGCACTTGGTTTTCCGTGACGTGCAAATGAACGACGGGGGCACCTACTACTGCTGGCTCCAGGGCAAGCTAGCGGTGGAAATAAGACTCTCGATAACACGGCGCTTTGCTCGCAAGCGAAAACTCTCTGACCCCGAGTCGGTGTACGCCATGAAGGCTATTTTGTTGAGCTACACTGTGTTCACAGTCATCTTTGtcctatttttaattgtaaggCTTCTCTGGCAATATTTCATAGGCAGAGAAATGTTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20247 lncRNA downstream 59408 32859241 ~ 32861597 (-) True G16293
TU20246 lncRNA downstream 63540 32854781 ~ 32857465 (-) True G16292
TU20187 lncRNA downstream 484322 32434236 ~ 32436683 (-) True G16250
TU20186 lncRNA downstream 492925 32427852 ~ 32428080 (-) True G16249
TU20185 lncRNA downstream 495049 32425716 ~ 32425956 (-) True G16248
TU20285 lncRNA upstream 62005 32984254 ~ 32984464 (-) True G16325
TU20354 lncRNA upstream 333404 33255653 ~ 33256382 (-) True G16375
TU20356 lncRNA upstream 361765 33284014 ~ 33284227 (-) True G16377
TU20357 lncRNA upstream 369782 33292031 ~ 33292249 (-) True G16378
TU20405 lncRNA upstream 402837 33325086 ~ 33328341 (-) True G16422
AMCG00016867 mRNA downstream 49480 32863246 ~ 32871525 (-) True AMCG00016867
AMCG00016864 mRNA downstream 228654 32674317 ~ 32692351 (-) True AMCG00016864
AMCG00016862 mRNA downstream 330471 32584019 ~ 32590534 (-) True AMCG00016862
AMCG00016857 mRNA downstream 374191 32545619 ~ 32546814 (-) True AMCG00016857
AMCG00016858 mRNA downstream 387246 32508349 ~ 32533759 (-) True AMCG00016858
AMCG00016871 mRNA upstream 180 32922429 ~ 32924404 (-) True AMCG00016871
AMCG00016870 mRNA upstream 4782 32927031 ~ 32930813 (-) True AMCG00016870
AMCG00016869 mRNA upstream 9444 32931693 ~ 32934506 (-) True AMCG00016869
AMCG00016876 mRNA upstream 219189 33141438 ~ 33148429 (-) True AMCG00016876
AMCG00016878 mRNA upstream 233034 33155283 ~ 33160959 (-) True AMCG00016878
TU20188 other downstream 417753 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other downstream 422110 32497507 ~ 32498895 (-) False AMCG00016859
TU20184 other downstream 497567 32423058 ~ 32423438 (-) True G16247
TU19613 other downstream 2391505 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 2718654 30201459 ~ 30202351 (-) True G15706
TU20326 other upstream 253827 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 504239 33426488 ~ 33431085 (-) False AMCG00016889
TU20442 other upstream 566476 33488725 ~ 33513579 (-) False AMCG00016891
TU20574 other upstream 1184441 34106690 ~ 34107941 (-) True G16563
TU21119 other upstream 4835908 37758157 ~ 37758471 (-) True G17032

Expression Profile