RNA id: AMCG00016870


Basic Information

Item Value
RNA id AMCG00016870
length 1162
RNA type mRNA
GC content 0.46
exon number 3
gene id AMCG00016870
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32927031 ~ 32930813 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAAATAGCTGAAAATACCACCACACCCAACAGTATGGGTGAGGGGGGGTGTCAGGATGTCTGAGCTACTATGTTCTCCATTGCTGTGGAGTTTTTAACTTCATAACTCAGAGCTGCCAAACAAAACGCCCTGATCACAAGCTGTTGCTGATCCTCCTGAAAATATAAAAAGACTGCAAAGATGGCAGAGAATGCAGAGGCAATAGCAGCTAATGTCAGCACCAACAGGAACGTGACCGTGGAGATCAGCAACCTCACTAGCAACTACTGCTTACTAAACCCGAGGATCTTCCTGGAGAGCGGGCACGTCTACAACCCGCCTCAGCCCACTATCCGGCCCATGAAGACGGAAGTGTGTACCTTCAGCAAGATCGCCAGCAAGGTCGAGGGGGCAGTGGGGGTAATGACCTACGACCTCTTCGAGCGCAACAGGAAGGACTACATAGAGAGCATGGCCATCATGTTCTCGGTGCCTTTTGACTACAACATGTACAAGAACAGGTTTGCGGTGGGCATCTACAGCAGGGGCCGCAACTGCGACCAATCCTtgtataaagaaatgtataacaGTAAGGACCACAAGGGCTTCGTGAGCGCAGAGGCCACAGGCACAGCCATCAATCATGTCGGGGACTACCTTGATATTAAGGCCACCATGTGTCCTATGGGGAGAGCCATTATGAAAGTGGAGGTGTGGGATAAGCTGTTCACTCCTTATGGCCAGCAGGCAATGTCTTATTGAAGCACATACTTCACAGGGTGCACATGGGTCTGACGGTTGGATTTACACTTGGCCATTATGACTAGCAATACTGGTCATCAACAATGGCTAGAAACAAATTACCAGCGATAGTgtgaagacatttaaatgtttcagtaatTCACATGAAAAGACAGTACACATGTAACACACAGTAGATTTGGTGATGTCATTGCATGTTCACCATTTAAGAAATATTCCTTTAGTTGAAATCAAATTAGGAtcaggagggaaaaaaaataaaggttaagATTTCAAGTTGAAGACTTAGTAGGGCAACTGGACTCATCATCCGCAtctgaattcatatttttgttctaCAACTTCTGACATCTGGAAAACCAAAGCCTGTCTTGCTTCTGTCATGACTGTCACACAATAAATGCCCAGTTCCAAAAACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20247 lncRNA downstream 65434 32859241 ~ 32861597 (-) True G16293
TU20246 lncRNA downstream 69566 32854781 ~ 32857465 (-) True G16292
TU20187 lncRNA downstream 490348 32434236 ~ 32436683 (-) True G16250
TU20186 lncRNA downstream 498951 32427852 ~ 32428080 (-) True G16249
TU20185 lncRNA downstream 501075 32425716 ~ 32425956 (-) True G16248
TU20285 lncRNA upstream 53441 32984254 ~ 32984464 (-) True G16325
TU20354 lncRNA upstream 324840 33255653 ~ 33256382 (-) True G16375
TU20356 lncRNA upstream 353201 33284014 ~ 33284227 (-) True G16377
TU20357 lncRNA upstream 361218 33292031 ~ 33292249 (-) True G16378
TU20405 lncRNA upstream 394273 33325086 ~ 33328341 (-) True G16422
AMCG00016871 mRNA downstream 2627 32922429 ~ 32924404 (-) True AMCG00016871
AMCG00016868 mRNA downstream 4782 32921005 ~ 32922249 (-) True AMCG00016868
AMCG00016867 mRNA downstream 55506 32863246 ~ 32871525 (-) True AMCG00016867
AMCG00016864 mRNA downstream 234680 32674317 ~ 32692351 (-) True AMCG00016864
AMCG00016862 mRNA downstream 336497 32584019 ~ 32590534 (-) True AMCG00016862
AMCG00016869 mRNA upstream 880 32931693 ~ 32934506 (-) True AMCG00016869
AMCG00016876 mRNA upstream 210625 33141438 ~ 33148429 (-) True AMCG00016876
AMCG00016878 mRNA upstream 224470 33155283 ~ 33160959 (-) True AMCG00016878
AMCG00016877 mRNA upstream 237817 33168630 ~ 33171933 (-) True AMCG00016877
AMCG00016879 mRNA upstream 260889 33191702 ~ 33195256 (-) True AMCG00016879
TU20188 other downstream 423779 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other downstream 428136 32497507 ~ 32498895 (-) False AMCG00016859
TU20184 other downstream 503593 32423058 ~ 32423438 (-) True G16247
TU19613 other downstream 2397531 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 2724680 30201459 ~ 30202351 (-) True G15706
TU20326 other upstream 245263 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 495675 33426488 ~ 33431085 (-) False AMCG00016889
TU20442 other upstream 557912 33488725 ~ 33513579 (-) False AMCG00016891
TU20574 other upstream 1175877 34106690 ~ 34107941 (-) True G16563
TU21119 other upstream 4827344 37758157 ~ 37758471 (-) True G17032

Expression Profile