RNA id: AMCG00016875


Basic Information

Item Value
RNA id AMCG00016875
length 639
RNA type mRNA
GC content 0.48
exon number 10
gene id AMCG00016875
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33035302 ~ 33109567 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggctCTAATAACTGGAAGAGCATGGCCTAAGGCATACAATGTGATGCCACGGCAGCGCCTCCTGttgAAAAAGACTGCATCTCGCTCGCATTATCCCCACCCAAGGAAGAATAGTGAGGCGCAAGCCACAGAGGACCAGAAGGACAACAAGAGACGGGAAAGACCCCTACTGGATCAGAGCTCAAACAAGAGCAGAGATCAAGTAAAGACCCAACATGAGTTTTTTAACATGTCTGGAATCCCAAAGGTCTTGGCATGTATAGACTGTACTCATATTCCAATAACACCACCAGGCATAGAGGCCTGTGATCTTTTAAAATTGCAGACTAAAAGCGGAACCCAAGGACGAACAGATTGGAATGCCTTGGCCTGGTACAATGCACTAATAGCAGGTTGCCAAATAGGAAACCACCTTTCCGATGTGGCAGTTAGCCAGAAGTGGCCCAACTCCAGCCATGGAGAGGACCCCTTCACTCCTTTCCCCCGCTTGCTTTTTATCCTAAAATTGAAATCGTCAAATGTGATTCATCATGACTTGCCACAGCAGAAGGACTGGAAACTAAATGCACGCCCATCTCAAGAGCTGCAATTCATCTCGCCCAGAGCCGTGCTGTCTGACTCGGCCTGTCCAATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20283 lncRNA upstream 52972 32981779 ~ 32982330 (+) True G16323
TU20241 lncRNA upstream 176286 32857551 ~ 32859016 (+) True G16290
TU20144 lncRNA upstream 592717 32438254 ~ 32442585 (+) True G16211
TU20094 lncRNA upstream 772630 32261711 ~ 32262672 (+) True G16169
TU20089 lncRNA upstream 782073 32251814 ~ 32253229 (+) False AMCG00016841
TU20320 lncRNA downstream 70138 33179705 ~ 33179940 (+) True G16350
TU20321 lncRNA downstream 70672 33180239 ~ 33180439 (+) True G16351
TU20374 lncRNA downstream 215527 33325094 ~ 33328342 (+) True G16395
TU20376 lncRNA downstream 219230 33328797 ~ 33333746 (+) True AMCG00016880
TU20498 lncRNA downstream 536921 33646488 ~ 33648455 (+) False AMCG00016898
AMCG00016873 mRNA upstream 13432 33012918 ~ 33021870 (+) True AMCG00016873
AMCG00016872 mRNA upstream 45344 32986580 ~ 32989958 (+) True AMCG00016872
AMCG00016866 mRNA upstream 114075 32895759 ~ 32921227 (+) True AMCG00016866
AMCG00016865 mRNA upstream 179001 32810085 ~ 32856301 (+) True AMCG00016865
AMCG00016863 mRNA upstream 257830 32773075 ~ 32777472 (+) True AMCG00016863
AMCG00016874 mRNA downstream 38924 33148491 ~ 33151617 (+) True AMCG00016874
AMCG00016885 mRNA downstream 66704 33176271 ~ 33177932 (+) True AMCG00016885
AMCG00016886 mRNA downstream 97905 33207472 ~ 33221284 (+) True AMCG00016886
AMCG00016881 mRNA downstream 111967 33221534 ~ 33244483 (+) True AMCG00016881
AMCG00016883 mRNA downstream 146658 33256225 ~ 33292591 (+) True AMCG00016883
TU20240 other upstream 177862 32856361 ~ 32857440 (+) True G16289
TU20166 other upstream 532046 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other upstream 532046 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other upstream 532046 32500796 ~ 32503256 (+) False AMCG00016854
TU19916 other upstream 1300986 31728556 ~ 31734316 (+) False AMCG00016830
TU20517 other downstream 559062 33668629 ~ 33672620 (+) True AMCG00016901
TU20550 other downstream 937804 34047371 ~ 34047720 (+) True G16546
TU20555 other downstream 990748 34100315 ~ 34100863 (+) True G16550
TU21320 other downstream 5386484 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 9281730 42391297 ~ 42397787 (+) True G17697