RNA id: AMCG00016877


Basic Information

Item Value
RNA id AMCG00016877
length 1446
RNA type mRNA
GC content 0.60
exon number 6
gene id AMCG00016877
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33168630 ~ 33171933 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAGAGGGGAGCTGCCCGTTGCTGCCATCCCATGAAGCTTTGCTGAAGAGAGTGAGGGAGCtggagggagaggtggagaggcTGAGAACCCTGCTGAGAGAGCGGGATGGAGCAGGGGGCGAAGAGCAGGTCACAGATATGGGAAGTGCCACTGTGGGGCAAGAGGGTGAGGGGGTTGTCAGCCAGCAAGCCCAAGGGACAAATGGGCAGACAGAGGGCAGCAAGAAGAAGGGGAAGAAAGGGGGCCAGGCACGGCCATTCGATTTCTCAGTCCACCCTCGGCGCCATGTGGCCCTGCGCCTGGCCTACCTGGGCTGGGGCTACCATGGATTCGCCTGCCAGGAGAACACCAGCAACACTGTGGAGGCTCGGCTGTTCGAGGCCCTGGGCAAGACACGGCTGATTCAGGACCGCCAGGTTTCCAACTATCACCGCTGTGGGCGCACTGACAAGGGCGTGAGCGCCTTCTCCCAGGTGATCTCCATTGACCTGCGCTCCACACAGTTCTGTGGGGGGCTGGGCGTTCTCCCCCCAGCTCAGGGCAGCAGCGTGCCCTCTGGGGGCAGCTTGAACTCCGCAGAACTGCCCTATGTCAAGATCCTGAATCGCGTGCTGCCCCAGGACATCCGGGTACTGGACTGGGCGCCGGTGGAGACGGGCTTTAGCGCGCGCTTTGACTGTCAGTCCAGGACTTACCGGTACTACTTTCCCCGCGGAGGCCTGGACACTGCTCTCATGGCTGCTGCCGCCAGACGCTACGAAGGCACCCATGACTTCAGGAACCTGTGTAAGATGGATGTGGGCAACGGGGTCCTGCAGTTCCAGAGAACCATCCTGTCCGCCTCCGTCCAGCCTGCCCAGTCCCTCCAACACCCCTCTGCTGACCCTTACGACCTCTTCGTGTTCGAGGTCAAAGGGCTGGCCTTCCTCTATCACCAGGTGCGCTGCATGATGGCCATTCTGCTCTTGATTGGACAGAAACTGGAGGCTCCAGAGGTGATCGACCAGCTATTGGACGTCGAGAACAATCCCAGAAAACCCCAGTACAGCATGGCAGTGGACTTCCCCCTAGTCCTGTATGACTGCCAGTTCAATGGGTTGAGCTGGCAGGGCGAGGGGGAGGAACTGGCTCAGTCCGCTGTGTCCACGCTGCAGCAACACTGGACTCAAACAGTCATCAAGACGCAGGTCCTCCGAGACATGATCCAGGACCTGCACAGCACCGGTGAGTTCTCTTCTCCCTCTTGTTGGCTACTGGAAGGCACCAAACAGCGCAACTACCGCCCCCTGCTGGATAGGCCGCGCTGTGAGAGCCTGGAGTCCAGGATTGAGCATTTTGTGAAGAGAGGCCGGCTGGAGCGAGAGGAGAATGAGGACGGGGACGGGGGTGTGCACAGAGGCAAGAGGTCAAAACACCAGAAGACCACAAACCTGCCTAGCTAA

Function

GO:

id name namespace
GO:0001522 pseudouridine synthesis biological_process
GO:0008033 tRNA processing biological_process
GO:0003723 RNA binding molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG:

id description
K01855 PUS3, DEG1; tRNA pseudouridine38/39 synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20285 lncRNA downstream 184166 32984254 ~ 32984464 (-) True G16325
TU20247 lncRNA downstream 307033 32859241 ~ 32861597 (-) True G16293
TU20246 lncRNA downstream 311165 32854781 ~ 32857465 (-) True G16292
TU20187 lncRNA downstream 731947 32434236 ~ 32436683 (-) True G16250
TU20186 lncRNA downstream 740550 32427852 ~ 32428080 (-) True G16249
TU20354 lncRNA upstream 83720 33255653 ~ 33256382 (-) True G16375
TU20356 lncRNA upstream 112081 33284014 ~ 33284227 (-) True G16377
TU20357 lncRNA upstream 120098 33292031 ~ 33292249 (-) True G16378
TU20405 lncRNA upstream 153153 33325086 ~ 33328341 (-) True G16422
TU20499 lncRNA upstream 456167 33628100 ~ 33628919 (-) True G16502
AMCG00016878 mRNA downstream 7671 33155283 ~ 33160959 (-) True AMCG00016878
AMCG00016876 mRNA downstream 20201 33141438 ~ 33148429 (-) True AMCG00016876
AMCG00016869 mRNA downstream 234124 32931693 ~ 32934506 (-) True AMCG00016869
AMCG00016870 mRNA downstream 237817 32927031 ~ 32930813 (-) True AMCG00016870
AMCG00016871 mRNA downstream 244226 32922429 ~ 32924404 (-) True AMCG00016871
AMCG00016879 mRNA upstream 19769 33191702 ~ 33195256 (-) True AMCG00016879
AMCG00016884 mRNA upstream 135808 33307741 ~ 33318582 (-) True AMCG00016884
AMCG00016888 mRNA upstream 161529 33333462 ~ 33348062 (-) True AMCG00016888
AMCG00016887 mRNA upstream 209951 33381884 ~ 33390755 (-) True AMCG00016887
AMCG00016889 mRNA upstream 219856 33391789 ~ 33434651 (-) True AMCG00016889
TU20188 other downstream 665378 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other downstream 669735 32497507 ~ 32498895 (-) False AMCG00016859
TU20184 other downstream 745192 32423058 ~ 32423438 (-) True G16247
TU19613 other downstream 2639130 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 2966279 30201459 ~ 30202351 (-) True G15706
TU20326 other upstream 4143 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 254555 33426488 ~ 33431085 (-) False AMCG00016889
TU20442 other upstream 316792 33488725 ~ 33513579 (-) False AMCG00016891
TU20574 other upstream 934757 34106690 ~ 34107941 (-) True G16563
TU21119 other upstream 4586224 37758157 ~ 37758471 (-) True G17032

Expression Profile