RNA id: AMCG00016878


Basic Information

Item Value
RNA id AMCG00016878
length 2622
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00016878
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33155283 ~ 33160959 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTTATGATCGGTTTAACCATGCAGTGCCCAGCCCAGACTGCTTCTTCTCTCATACTAAATCACAGgcAGTATATACTGAGGACAACACTAAACCCCTTCAGCCCCTCACATCCTGCTATTCTCGAACCGGTTCTTCACTCTCCGAGGAGTCTGCCCTTCCCTTTGCACCTTGGGAAACTTTCGATGATCCATATAAAGCCACGGATTGTGCCCAGAACAATGCCAAGAGCAGGAGTTTTGGTGACGTAAATGAATGTGGAAGTGAAGCTGACCTTTATGGACTGGTGTCGAACATTCTTGAAGAACCAGATAGAATGGATACTCATTTGGCAGAAGGGATTTCATCCTCCAGTTTAAAATCGATTTGGTTATCAAACTCAAGGAGGGAAGATATCCAGCAAGACATTGACGATGAATCTAAAATTCAGCTGAATTCAGTTTTTCAACAAAGCCCACTATACCCAGAGATATTCAGCAGAGTTCAGAGACAGCCCCTGGACAAAGAGTTACAGCAAAAGACTGAGCCTTATCAACAATTCAGTAGCTTTAACATTGCAGATCAGTGGCTTTTTCCTTCAAGCAATGGAGACACGGATGCATATAGTTTGCAGACCCAAAGAGTGAACAGAGTGCCAAGTGCAGGTATACCCTCTCTGGGAAACTCCCTTTTCTCCAAAACCAGTCTGCCCACTATACAGAAGGACTCAGAGAGAGCTGACTTTAACACTTTTGGATATGGTGATGGATTCTCAGGCACCCATATGCTTTCTGACCACATTGAAGACACTGTATCATCTTTCTGCTTACCTAACAAGATAAACGACGAGTTCTTGGATCCTTATTCTGACTATTCAGATTCCAACCAAAATAAAGCCCGCAAGTGTACGCAGTTTGCCATGCAAAACAGTAATGCATTAGCAAGCGATATACAGGCATTAGCGGTTAGTGAAAATGGCTGTTACAGCAATCAGTCCCAGGGTAGAAACGTCGGACAAGAACGATATGTAGAGCAGCTTTCAGATCACCAGACTTTCAAATATCCCAAAATGCCAGCAGCTGACACTCGTGAGAGGCAGTATGACACAGAGCTGCAGGGGGACTCTGTAGAGCACAGGACCCTACACTGTGGCGTCAACACACCGACACAACAAACTGATTATGGTTCCAGAGATTTCTCAGAGTGTAATACACAGCATGCCACATACTTCAAGCACCCGCTTGCTCCGTCAGGGTCTCTGCCAACAGGCACCGCTTCACCAAACAGACAAGGGTGGTCAAGCTTGCAAAAAGGCAGTAATATTGCAACCAAGCAAAATCAACCTAGTCAATATCACAATCAGTTTAATGGCAAATATCACAATCAGGGCAAGGAACCCATGGGGAGTAATCAGATGTCAGGTCTTTCCAAAATCCTATCACCCTTCAGCATAGACTGTTCAGCCCAGGATATAAAGCAGCCACAAAGGGGACCACCGGGCTTCCCAGAATACAATCAAGTGGATAATGCTGCACCTTCCGGTAATGCGTTCAGCTACAGACCTGCAAGCCAGCATCAGATGGGCCTCAATCTTGAAGGGCTGAGGAAGGGAATTGCAGAGAGGGAGTCTGAACTGCAGTCCGATCAGAGCACACAGCACACGGATCTCTCCTGCGACTCACTCTCTTCTCAGCACTTTGAGGTCTATGACGCACCTGGGCACCCCAACCCTCAAAAAAATAACCTCACTGAGGGAGAGAAGAAACGAGGCTTCATGCAGAACCCTTACCTTAATTTTTGGCAAAGTGATCATACTTTCCAAAGGCCAGCCAGCGGGAACAGCAGCATAAATAACCCAGGGAAGCCTTCGCAGGTACCTTGCTTCCCGTATTCGTATGCAACCGGTGACACCAGGCCAAGCCCTCGCCACTTACAGCTTAATTCTGGCAGTTTCCCTTCAAGATCCTGCTTTCCTAATGGCAACTCTGTTACACTTATGGATCTGTATGAGCTTCTACCAGATAACGAGTTCAGTCAGTCCTACCCTTATCTTAATTACACAGCACCCAGGGATAGCCCTTACCCTGCTCTAGTTCCATCTCTAAGATCCCCTAGACTGACAAAAACCCGGTGTGGACCTACAAGTCAACTACATCTGTCCCTCGAGGAATGTTATGAACAGTGGAGAGGGctggaaaaagaaaggaaaaagacagAAAGCATTCTGGCCAAGGGCTATCCAGGGAAAATAATCTCAAATGTTAACATAAACTCGATTCCAAAACTTCCCTCCAATCCTTCCCGTGTAGATCGTCTTATTGTGGATCAGCTGCGTGAGCAAGCCAGGgttgtgagtctgttgggaaaAATGGAGTGTCTGCGCAGCTCCCCTCTGCATGCCAATATTTCTTCTGCGCTTGATAGACACCTTGAGGCTATTTACGTCACACAGGCAAGACGGAAAATGGAATTTGTTAATGTATCGAATCCACAGCGACAAGGAGCTCCTCGTTCTAGGGAGGACACAGACATTCTTCTGCTGGCTGCAGCGGTAAAGGACATGGCTGGAGCTACAAAGAAATCCCGTACAGCTCTTTGGTGTGCTCTGCAGATGACACTGCCAAAAGCGGCCATGAGTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20285 lncRNA downstream 170819 32984254 ~ 32984464 (-) True G16325
TU20247 lncRNA downstream 293686 32859241 ~ 32861597 (-) True G16293
TU20246 lncRNA downstream 297818 32854781 ~ 32857465 (-) True G16292
TU20187 lncRNA downstream 718600 32434236 ~ 32436683 (-) True G16250
TU20186 lncRNA downstream 727203 32427852 ~ 32428080 (-) True G16249
TU20354 lncRNA upstream 94694 33255653 ~ 33256382 (-) True G16375
TU20356 lncRNA upstream 123055 33284014 ~ 33284227 (-) True G16377
TU20357 lncRNA upstream 131072 33292031 ~ 33292249 (-) True G16378
TU20405 lncRNA upstream 164127 33325086 ~ 33328341 (-) True G16422
TU20499 lncRNA upstream 467141 33628100 ~ 33628919 (-) True G16502
AMCG00016876 mRNA downstream 6854 33141438 ~ 33148429 (-) True AMCG00016876
AMCG00016869 mRNA downstream 220777 32931693 ~ 32934506 (-) True AMCG00016869
AMCG00016870 mRNA downstream 224470 32927031 ~ 32930813 (-) True AMCG00016870
AMCG00016871 mRNA downstream 230879 32922429 ~ 32924404 (-) True AMCG00016871
AMCG00016868 mRNA downstream 233034 32921005 ~ 32922249 (-) True AMCG00016868
AMCG00016877 mRNA upstream 7671 33168630 ~ 33171933 (-) True AMCG00016877
AMCG00016879 mRNA upstream 30743 33191702 ~ 33195256 (-) True AMCG00016879
AMCG00016884 mRNA upstream 146782 33307741 ~ 33318582 (-) True AMCG00016884
AMCG00016888 mRNA upstream 172503 33333462 ~ 33348062 (-) True AMCG00016888
AMCG00016887 mRNA upstream 220925 33381884 ~ 33390755 (-) True AMCG00016887
TU20188 other downstream 652031 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other downstream 656388 32497507 ~ 32498895 (-) False AMCG00016859
TU20184 other downstream 731845 32423058 ~ 32423438 (-) True G16247
TU19613 other downstream 2625783 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 2952932 30201459 ~ 30202351 (-) True G15706
TU20326 other upstream 15117 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 265529 33426488 ~ 33431085 (-) False AMCG00016889
TU20442 other upstream 327766 33488725 ~ 33513579 (-) False AMCG00016891
TU20574 other upstream 945731 34106690 ~ 34107941 (-) True G16563
TU21119 other upstream 4597198 37758157 ~ 37758471 (-) True G17032

Expression Profile