RNA id: AMCG00016879



Basic Information


Item Value
RNA id AMCG00016879
length 714
RNA type mRNA
GC content 0.52
exon number 7
gene id AMCG00016879
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33191702 ~ 33195256 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGTTGAAAAAATAGCATGGGTCAAGTTCCTCTTCACCTTCTTCAATGGCATGTTCTGGgTGTCTGGGATCACCCTGATTGCGGTGGGTGCATTGTCACGTACCTCCTACACAGAGCTCGAGGCCTTCACTGGGGGCGGGCTCACCCACGCCGCCATCCTTCTCATTGTCCTGGGTGTGGCCATCTCCGTCTTCGCCTTCGTGGGATGCATGGGGGTGTGGTCAGACAGCCTCCTGCTGCTTGGGTTGTTCACAGGCATTCTTATACTGATCCTCACCCTCGAGATCCTGGCTGGCATTCTCTTCACTATCTTCCGAGCCAAGGTGGAGAAGAAAATCACAAGGAAAGCCAAGGAGGTGTTCAAGAAATATGGCAGTAAGAACAGAGCTCTTATTGATGACATTCAGGACCAGTTCCACTGTTGCGGAGCTGTGAACTACACTGACTGGTTTGAGAGTGAGGGCTGGCACAATCACAGCATGGTGCCTGATTCCTGCTGCCTGGTGGAGAAGGAGGCCTGCGGTCTAAACCTCTCCCCGGCCAGTATCTACAGAAAGGGCTGTGTGGAGTCAGTCAAGGAGTTTCTGAAAAGCAATCTGGTTTGGATTGGAGGGGCCTGCATCACACTGGGGATCATTGAGATTCTTGGAGCTTTTCTGGGCATGTGTCTGCTCCAGAACATCCTCAAGACACACCACTACCAGGTCATGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU20285 lncRNA downstream 207238 32984254 ~ 32984464 (-) True G16325
TU20247 lncRNA downstream 330105 32859241 ~ 32861597 (-) True G16293
TU20246 lncRNA downstream 334237 32854781 ~ 32857465 (-) True G16292
TU20187 lncRNA downstream 755019 32434236 ~ 32436683 (-) True G16250
TU20186 lncRNA downstream 763622 32427852 ~ 32428080 (-) True G16249
TU20354 lncRNA upstream 60397 33255653 ~ 33256382 (-) True G16375
TU20356 lncRNA upstream 88758 33284014 ~ 33284227 (-) True G16377
TU20357 lncRNA upstream 96775 33292031 ~ 33292249 (-) True G16378
TU20405 lncRNA upstream 129830 33325086 ~ 33328341 (-) True G16422
TU20499 lncRNA upstream 432844 33628100 ~ 33628919 (-) True G16502
AMCG00016877 mRNA downstream 19769 33168630 ~ 33171933 (-) True AMCG00016877
AMCG00016878 mRNA downstream 30743 33155283 ~ 33160959 (-) True AMCG00016878
AMCG00016876 mRNA downstream 43273 33141438 ~ 33148429 (-) True AMCG00016876
AMCG00016869 mRNA downstream 257196 32931693 ~ 32934506 (-) True AMCG00016869
AMCG00016870 mRNA downstream 260889 32927031 ~ 32930813 (-) True AMCG00016870
AMCG00016884 mRNA upstream 112485 33307741 ~ 33318582 (-) True AMCG00016884
AMCG00016888 mRNA upstream 138206 33333462 ~ 33348062 (-) True AMCG00016888
AMCG00016887 mRNA upstream 186628 33381884 ~ 33390755 (-) True AMCG00016887
AMCG00016889 mRNA upstream 196533 33391789 ~ 33434651 (-) True AMCG00016889
AMCG00016893 mRNA upstream 244296 33439552 ~ 33473811 (-) True AMCG00016893
TU20326 other downstream 12819 33176076 ~ 33178883 (-) True G16356
TU20188 other downstream 688450 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other downstream 692807 32497507 ~ 32498895 (-) False AMCG00016859
TU20184 other downstream 768264 32423058 ~ 32423438 (-) True G16247
TU19613 other downstream 2662202 30526292 ~ 30529500 (-) True G15787
TU20415 other upstream 231232 33426488 ~ 33431085 (-) False AMCG00016889
TU20442 other upstream 293469 33488725 ~ 33513579 (-) False AMCG00016891
TU20574 other upstream 911434 34106690 ~ 34107941 (-) True G16563
TU21119 other upstream 4562901 37758157 ~ 37758471 (-) True G17032
TU21144 other upstream 4832227 38027483 ~ 38058939 (-) False AMCG00016959

Expression Profile