RNA id: TU20376


Basic Information

Item Value
RNA id TU20376
length 4697
lncRNA type sense_over
GC content 0.41
exon number 2
gene id AMCG00016880
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33320144 ~ 33333746 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCACCCAAAAAGCAACTTTATTTAGCTGATTGGATTAAATctacaaacagacttttatccCACTGAAACTTAACAGAAATCCCCTTTGAACATCAGAAATCTGTATACAACACTCCAATCTATTGAAGCTAGtcttcttaatatatatatatttcaattgagCTAAATATTATTGACATTATCTGCCAGGAATGATGgcaacactttaaaatagaCTAGGTGGTGAATGAATGGTgccatacatatttatttcccgcaataatcaatttgtattcatttgaatatgtGGGACTACATTAGGTACATTTCTGTCTTCTGTAATAGATCGAAGGTTGATTTTAACCAGGCATTGTCAAAGAAAGCCAACGGTGGACAACAGTCAAGCACAATGTATTATACTCCCATCTGCCCAGGCTGTGTGGAGTAGCTTGGTTGACCACCCTGTGTTCAGACATAGGAAGTACTGTTATCCCTGAGAAAACATCAAGCAAACTTCCTATTCTCCTAAATGATTGCATTTCACCTAAACACCTGTTCAGCATTCACCTCATCACTTTAATACATTCCacaaataatgttgtttttaaattaaaagatccCTCATAGCATATTAgccatcatgtttttattattgtgcacCCAAGTTAAAAGAGAATTTTCCAGCCCctttaaaacacaagaaatgAGCCCAGGTCTGAAGGAATTGCTCCTCTATGTGTGTGCAGGACAGAGACCAAAATACAGAAGCCACCCCGGAGACCCCTGGGGTAAGCAATGCCTGTTTTTGAACAatatgatgtgtatatatatataacaccaCAAACATTAGCTGGGGATATgacaattgttttgtgttatttgttttcttgttatgtatttatttcctgatCGTGTGTCTGTGGGCAGGATGCCTAACTATAAAGCAAGGGTACTACACTCCAGTTCTCAGTGGAGCCCTAGGCCTTGGATACTGAACGGAATCATTTACTTGATTATGAAGAAAGTTTAAAGATATTTTATCCTGTACATTGTTCTGTTAATAAGTTAGTGTCAGCATATACTGAAGTGCTAGCATCTGTAATACCTGCAGGGTAGTGGCCCACTCTCTTGATAACTGGGAAACTGTCTGTGATGAGTTCAGTCAAGTAACTAAGCTGGGAGGGAGTTAAAACCAACATTCTTCATCCTTTGAGTACCTTCACACTCTTCATTATCATCGTAACTGTGATTCTGTGAACTGTTCTAGGATGAtttcaagaaaagaaagaaaataaaaatactggtGTAAAGCATTGTTTGCAATATTACatcttagttgtttttttaccattGTAAGCTTTTTCTCAGTTCTGCCCTGTTATTCAAATAGTTCCAGAAATCTTAGTTTTTTGTAACCATTTTGACAGACAGAGCTGACTTGACTTCCTACACTGAGCTGCCAGAGCCGGCAAAATCCAGCAGCCAGCCAGATGTGTGTGACCTGGAACCAAAGAGAATGCAGAGATGGGAAAGACCCCCTAAAACGGGCCATCACAATCTGGTAGATCTATCCTAATAACACCAACCCAACATTCACTGTTAAGATTAATATTCCAGaccatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgggggtgggggggacgaGTCCTggatgtctctctctccctctctctccaggtagGAAACATAATGTAACTGTGCAGTCCTTTCACCTTTTCCTGCCTTTTGTAAATTCCTGTTCCTCTCCAGGAAGTCTCTGTGTGGCGGAAGTGTTCTCTTCATGTAGGCCTTGGATCaatttgtttcatgtttcaAGTCAGAGTCAAATACCTGGAGTTATCCTACCAAACAAAAGCCACCCAGCCAGGTCCATGCCACACCTGAGTTTCAGAGACAGCAGAAGAGTAAACCACCATATGTACCTTTCTCTGGTAACAACTGTCCTATGAGAGAGCTAAGTATCaccacaacaaaataacatgACAAGTTGTTACGTATTCTGCCACACCATTCCTTATTTTCCAGTTCCATATCCTGGCCACACTCACAGTAACACCCCGAAGGGTATGAGTTACCAGGCTTTTTCATAGTTATCTAtggtttcattcatttttggGTGAATCACTAGTTGCCGCTGTGCAGTTGCTCTGTGGATGCggtgtgtaaaaatgtaaaaccctctactttaaattaatatgttttgGATCATATATGTAAGTGTGTAGGTTCAGCTGTATTCTGACTGTTTGCAAAACCTAGTTTCAGTCTTATTTGAGTCAGCTGTGTTCCCAATCTCAAAACATCACATGTATTCAGGCTAATTATTTGGGGCTTGCAAATGAAAATTACAGGAATATATTcaattatgatttgttttaaaaggggCCACTAAAGCTAACTATGCTCAACATCACTATTCCTGAACTGACCTTTCCATGCCAAGGAAACATTGAGATTGAAGTCTGTTCAGTCTGTGTATGCCTACCCTTATCCCTGCTTGTATAGACTGTAGGGCTCTGAGTATAGACTTGTTGTAGACATCACAGGTACCTTTTGGTTGGTAGCTTAGGCGGACCTGCAAAAAACAGTGCATTGACGACTTCTTCCAGAATTACAGTGCACTCCGTTTATATAGCAATGACTGATATACAAATTTGCCACATATATCGATCAAAACCACTGGGACACAATCATCCCTACACTAACCCCTGCTAAATCACTGCAACATGTAAAACGATACTCAATAAAGTGCAATGACATGTCACAAGCCAATAAAGTTTACTTGAATTTGAGTGTGATGACATCTCACATTATCGAGCACCTAAAGTAAAGTCCTATCCCAGCTTGGGAAATAACAGGATCTGCTGTTTATTTAGCAGTCCACATGGCAAGGAATGGAAAGCCTCCTTCCGCAGACAACACCGTCTGGAGTCCTGCTATTGTCTTAGGGACTTTATCTTAAGACCTCACTAGCTCCACTCACTTAAactttgtgtatatttgtaacTTCCtgtatagtattattattgcctTGAATAAAAGCCCCACTTGGCTAATTGATTGTGTGgtaatgataaataatacaatattattattattattattattattattattattattattattattattattattattattaacaagaataaaaactgttgcaatgttggtatttattttttccatgttaaatatgtttaaaagtaaccataaatgtgatgtttctcaattgaattaaaaaataaataaaataaataaagacagttctttaaaatgtaacagtcGATTTCATACATCCTTGGCATTTGACTTGGGAGAACCAGCTGCTTATGCACCTCTCTCCATCGTGGAGGGAGGACGTTCGTATAAACGGAGGGCACTGCATTTCAATCGAGCTGATCAAGAAAGAAATATCCAGTGCAACACTCCAGGACTACACCTGTTTTATAGGGTTAAGGCAAACATTAGctagaatgaaaaaaataaaaaaataaaatgaagaaaaataaataaatatgtaactttattaaatgaaaatcagGAAGAAAACCCTACTTATAACAACAGTAAAATGATACTAATCCTGAAGTGGAAAGTGTCCTATGGTGCTGTGCACATACATGTTATAGCTAGTGTTGCACTACAGCGGCCCTACCTGCAGCTTCCCTCGCCAGCGCCACACGGCTTACTGCAGGATGATCCAAAACTGAAGTTTAGAAGCACAAAGCAAAGCCAAACTGGTCTTTACACTTGTGCACTTGATTAGCCCTACCACTGAGGGGATGTACCCACCACAATGTAGACACGGAGTGGGTCAGGTTGTGCTTTAGCTCGTCGAGGGGAATATTTTGTGCAAATTGTCAGACACAACTGCGGGGAAGTGGCAGTAGGTGCCTGTGCCACTGGCTCATCTGAAACACAGAGGCAATGAGTCAACATGCCCAGCCGGCCAGTCACTCGATTAGTTCCGGGAGGGACGCAAGACAAACAAGGAGAGACACAATCCAGCCATGGACTGAGCCTGTACACGACTGGAaagttattattagttttttccgTGGCCAAAAATCCAGGATGCTTCAACACTGGAGAAGACTAGGAGAGCACAGTGTGACACTAACACCCTCTACCTTGGTTGGGGTTCAGTCAGTGTTTGAAAGCGTTGGCACATCGTGGGCGATACAATGGCTTCCAGCCCTGGTCACCTATCGCCCTGTGCTGCTGTCCCTGAGCCTGTCCTGTGCTCCACCGGGAGGGGCTCTCTGGGATCTGGGAGAGCTTGGGTGAAGTAGGGCGGAGGCaatggaggagaggagggagggaggaaggaaggaTGGGGTGGGGACTTTGCGGTTCTAGCTGGCGGGCAGGACGGGGTCTGACACGTGCCTCTGGATCTCCACCAGGCCTGAGGAAGTCTCCAGGTGCTCAGGTAGGGAGGGGAAGCGTGAGCTCCCACACAGTCCGGTGGTCACAATGGTGGCCAGTGGCCGTTGGGGCCTGAGGCCAGGCGTGCTAGCCGGCTCTGTCTCAGGGTAGATGGACATGGTTTCATCGGAGGCCACAGTCAGGTGGATCCCGCTGGACAGTGAGTCTCGAGACTTGAGGTTGAACTTGTCTGAGTCCGGGtagtcagggct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20374 lncRNA upstream 455 33325094 ~ 33328342 (+) True G16395
TU20321 lncRNA upstream 148358 33180239 ~ 33180439 (+) True G16351
TU20320 lncRNA upstream 148857 33179705 ~ 33179940 (+) True G16350
TU20283 lncRNA upstream 346467 32981779 ~ 32982330 (+) True G16323
TU20241 lncRNA upstream 469781 32857551 ~ 32859016 (+) True G16290
TU20498 lncRNA downstream 312742 33646488 ~ 33648455 (+) False AMCG00016898
TU20509 lncRNA downstream 317335 33651081 ~ 33651289 (+) True G16512
TU20546 lncRNA downstream 659436 33993182 ~ 33995382 (+) True G16542
TU20553 lncRNA downstream 759530 34093276 ~ 34099596 (+) True AMCG00016909
TU20554 lncRNA downstream 759530 34093276 ~ 34098392 (+) False AMCG00016909
AMCG00016882 mRNA upstream 26884 33293053 ~ 33301913 (+) True AMCG00016882
AMCG00016883 mRNA upstream 36206 33256225 ~ 33292591 (+) True AMCG00016883
AMCG00016881 mRNA upstream 84314 33221534 ~ 33244483 (+) True AMCG00016881
AMCG00016886 mRNA upstream 107513 33207472 ~ 33221284 (+) True AMCG00016886
AMCG00016885 mRNA upstream 150865 33176271 ~ 33177932 (+) True AMCG00016885
AMCG00016890 mRNA downstream 190142 33523888 ~ 33548644 (+) True AMCG00016890
AMCG00016900 mRNA downstream 235666 33569412 ~ 33580105 (+) True AMCG00016900
AMCG00016903 mRNA downstream 246563 33580309 ~ 33597112 (+) True AMCG00016903
AMCG00016899 mRNA downstream 263416 33597162 ~ 33617484 (+) True AMCG00016899
AMCG00016896 mRNA downstream 285546 33619292 ~ 33624535 (+) True AMCG00016896
TU20240 other upstream 471357 32856361 ~ 32857440 (+) True G16289
TU20166 other upstream 825541 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other upstream 825541 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other upstream 825541 32500796 ~ 32503256 (+) False AMCG00016854
TU19916 other upstream 1594481 31728556 ~ 31734316 (+) False AMCG00016830
TU20517 other downstream 334883 33668629 ~ 33672620 (+) True AMCG00016901
TU20550 other downstream 713625 34047371 ~ 34047720 (+) True G16546
TU20555 other downstream 766569 34100315 ~ 34100863 (+) True G16550
TU21320 other downstream 5162305 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 9057551 42391297 ~ 42397787 (+) True G17697

Expression Profile