RNA id: AMCG00016896


Basic Information

Item Value
RNA id AMCG00016896
length 2081
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00016896
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33619292 ~ 33624535 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAAATTATAGCTGTAGCCTTAAGTGTTGTACACTACAGCTCTGCGTTAGCATACAACTCCCCCTGACACGACCTTTGTGTTTTGTATCctattgctttttgtttatatgaatcattattttccttttgaaatgtgCACATATTGGGATCTAAAGCTTACCGGcagacagtacagGGCTGTGCCAGGATGCTGTCTCGACCCCACAAGTCCAATCTGCTGTTTGCCTGTGGCTTTGTGCTGGGCTTCTGGCTGGCCTCCTTCACCATCACGGATCTCAGGCTGGAGCCGAGAGCCCAGTCTGCCCAAAAATGGCCAACACAGCACCACTTCCAACCCAGGACACCCAGTGTCAAAGCCCAGCACTCTTCCCTGTTTGCGCCTCAGAGCCGCCCCGCCTCCGCCCCCCCTGTGCGGGTGCTGTGCTGGGTGCTGACCTCTCCGGCCACCCTGTGGGTGAAAGCCCTGCACGTGCGCAACACCTGGGGCCGCTACTGCGACCGGCTGCTGTTCATGAGCTCAACCGCCGACCCCTCCTTCCCGGCTGTGGGACTGAACACCTCGGAGGGCCGGGGGGCACTGTACAACAAAACCATGGCGGCCTTCTCGCTCCTGCATGACCGCCACCTGCAGGAGGCTGACTGGTTCCTGAAGGCAGACGACGACACCTACGTAGTCATGCAGAACCTCCGACTCCTGCTCTCCCGCTACCCCCCCAACCGTCCTGTCTACCTGGGCCGCCGGTTCAAGCCCTTTGTCCAGCAAGGCTACATGAGCGGGGGCGCAGGCTACGTCCTGAACAGGGAGGCCCTCAAACGTTATGTACAGGGGCTCCGAGATGGCTCCTGCCCCCCGCTGACGGAGTTCGAGGACCTAGAAGTGGGCATCTGCATGGACAACCTGGGCATCCCAGCCAGAGACACTCGAGACCGCCTCCAACGGGAGACTTTCCACCCCTTGGCCCCAGATTTCATCATCCCCCCCTGGCTGAATTCCCCCAGCTGGTACAAAGAATACAGCTACTACCCAGTCAAGATGGGCCCAGACTGCTGCTCGGAAGCCTCCATCTCCTTCCACTATGTGACCCCCACAGTTATGTATGTGCTGGAGTACCTGACTTATCACTTGCGACCTGTGGGCTACAAAAGCCAGGAGGACGAGACTGTCTTTGAACAGCCACCTTAAATCAGTCTCCCACCCTATCACCCCCTGCTCTGCTGTCGTCAGCCACTTCAGGGCAACTAATCAGGCCAGCTGCATTAAACGCAAGTACTTCATCACATAGACATGATGAGCATATTAAGAGAACACTGTGTAGTagtggttaggactctggactcatgactggaaggttgtgggttcaagtCCCAGGTGGGACAGTGCTGTGGTCTTGCTGTACTTTTATACCCAAGGATCAGAGCACCTCCTGGACATGAGCGTGAGACATGacttttcttcctcctccttctcctgttACACGCCCACTTGTGACAGATGTCATCTTGGTAGATGTTGGGACTCTTTCCTTAACACCCTATGAATTCAGGtagtttctgtatatttatcATGCGCATCATTACATCCATTGAGTTAGTAATGAATTGAATTACCCATTAGAACCTCCAGTGGAATTGATTCCAGAAGAGTCTATTGTCTCTCCAGCATCTGGAGCCAATCTCTCTGATTTAACCAGAAACAGATGAGAATTGACTCAAGACATTTAACCAGAAAGACAAGACTAAACTGAATTTGTCTTCTTAATCAATGAatggcaaattaattaaattaacttattaatttaatcataaGGCAAAGTCATTGTTTCCCTTATAATAACTGATCATTTGGatgtggggaaaaataaacaaataaaaacacaaatgaaaaaatgtaggCCAATATCACAGATTTTATGTGCCCAATAAATTAagcctgaaaaataaaaagaccaaTACAGTATTATGTCGTGTCACTTGGTTGCAGTCCTCTGCCCTCTAGCGTGTCGCTACTGAACTGCATTTCTCTGTGTGCCAATGTAAGTGCTGAGCTTTTCTCCCTACATAAAGTTAACACTCGTGTTTAA

Function

GO:

id name namespace
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20376 lncRNA upstream 285546 33328797 ~ 33333746 (+) True AMCG00016880
TU20374 lncRNA upstream 290950 33325094 ~ 33328342 (+) True G16395
TU20321 lncRNA upstream 438853 33180239 ~ 33180439 (+) True G16351
TU20320 lncRNA upstream 439352 33179705 ~ 33179940 (+) True G16350
TU20283 lncRNA upstream 636962 32981779 ~ 32982330 (+) True G16323
TU20498 lncRNA downstream 21953 33646488 ~ 33648455 (+) False AMCG00016898
TU20509 lncRNA downstream 26546 33651081 ~ 33651289 (+) True G16512
TU20546 lncRNA downstream 368647 33993182 ~ 33995382 (+) True G16542
TU20553 lncRNA downstream 468741 34093276 ~ 34099596 (+) True AMCG00016909
TU20554 lncRNA downstream 468741 34093276 ~ 34098392 (+) False AMCG00016909
AMCG00016899 mRNA upstream 1808 33597162 ~ 33617484 (+) True AMCG00016899
AMCG00016903 mRNA upstream 22180 33580309 ~ 33597112 (+) True AMCG00016903
AMCG00016900 mRNA upstream 39187 33569412 ~ 33580105 (+) True AMCG00016900
AMCG00016890 mRNA upstream 70648 33523888 ~ 33548644 (+) True AMCG00016890
AMCG00016880 mRNA upstream 289729 33320144 ~ 33329563 (+) False AMCG00016880
AMCG00016902 mRNA downstream 1441 33625976 ~ 33628289 (+) True AMCG00016902
AMCG00016898 mRNA downstream 5477 33630012 ~ 33650080 (+) True AMCG00016898
AMCG00016897 mRNA downstream 28382 33652917 ~ 33662307 (+) True AMCG00016897
AMCG00016901 mRNA downstream 44058 33668593 ~ 33674361 (+) False AMCG00016901
AMCG00016906 mRNA downstream 136883 33761418 ~ 33773533 (+) True AMCG00016906
TU20240 other upstream 761852 32856361 ~ 32857440 (+) True G16289
TU20166 other upstream 1116036 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other upstream 1116036 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other upstream 1116036 32500796 ~ 32503256 (+) False AMCG00016854
TU19916 other upstream 1884976 31728556 ~ 31734316 (+) False AMCG00016830
TU20517 other downstream 44094 33668629 ~ 33672620 (+) True AMCG00016901
TU20550 other downstream 422836 34047371 ~ 34047720 (+) True G16546
TU20555 other downstream 475780 34100315 ~ 34100863 (+) True G16550
TU21320 other downstream 4871516 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 8766762 42391297 ~ 42397787 (+) True G17697

Expression Profile