RNA id: AMCG00016899


Basic Information

Item Value
RNA id AMCG00016899
length 1656
RNA type mRNA
GC content 0.57
exon number 12
gene id AMCG00016899
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33597162 ~ 33617484 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAGATCATGCCTACGTGAGagcagaggcagagggagagggagagggagagggaggaagcaTGCACAGGACCAAGGACAGTGCCGTCCTCGACTAGCGGCGAGCAGGCGTACGCGTACACTCCAGGTATGCACGCATAAGAGCTGCAACAGACCTTTATTGTGAGAGAAGGGGGATCTGGAGAGTGTTTTTCCCTCACTACTCCCTTCTCGGTGGATACTGCATCCCTCACCGCCCGGCATCTTCCTCTCGACGCCCCGAAGGCTTGGGAGTCTCTGTATATGGCGTAACACAGGGAGGGGTTTTGCTCGCTACACAGGCTCGGCGCCGTTTGAATGGAATCGAGCTGCGTCCAGTCAGCAATGGCTATGGGGCTGTCGTCCAAAAAAGCATCTTCTCGGAGCATCGCCGTGGAGCGCAAGAACCTGATCACGGTTTGCAGGTTCTCAGTGAAGACCCTGCTGGAGAAGTACACCGCCGAGCCCATCGATGACTCATCCGAGGAATTCATCAACTTTGCCGCCATTCTGGAACAGATTCTCAGCCACCGCTTCAAAGGCCCAGGCAGTTGGTTCAGCTATGACGGGCAGCGGAGCTTTTGGGACTACATTCGCCTGGCTTGCAGCAAGGTCCCGAACAACTGTATCACGAGCATTGAGAACATGGAGAACATCAACACATCCCGAGCTAAGGCAAGAGCAGGCTTGGATTATGGCCGTGCCTGGATCAGAGTGGCGCTGATGGAGAAACGCCTGTCAGAGTACATCGCCACAGCGCTGAGGGACACACGGCCAACCAGGAGGTTCTATGACGATGGAGCGATCATGTTGAGAGAGGAGTCCACTGTGCTGACGGGAATGTTGATTGGACTGAGTGCCATCGACTTCAGcTTCTGTCTGAAAGGGGAGGTGCTTGATGGGAAGAGTCCAGCTGTTATTGACTACACACCTTACCTTAAGTTTACACAAAGCTACGACTACTTGAGTGACGATGATGACCGTCACAGCGTGGACAGCAGCACTAGTGACGACAGCATCCCTGAGCACCCCTACATCCCCCTGGTCACCGACGAGGAGAGCTGGAGCAACAAGTGCCGCAAGATGGAGCAGAAGTTCAAAATCGTTTACGCACAGAAGGGTTACCTGGAGGAGCTGGTGCGGCTGCGGGAGTCCCAGCTGAAGAACCTGGAGGCCGAGAACAAGCGGCTCACTCTCCGACTGGAGGAGACCCGACTGCAGAGCCAGCAGGAGAAGAAGGAGCTGGAGAGCGTGAACGGGCCTGATTCCTTgCGAAGTTTCCACAGTGTGGAGCAGCTCTCTGCAGAGATCAGCCTGGATTCAGATTCCCAGAAGACCGAAGGGAAGCAGAATGGGGAGGTGTGGTCTACAGCAGGTAAAGACTACACCCCGTCCATGCTTGGTTTGTGTGGCTCACTGGCTTCCCTCCCCAGCTGCAAATCCCTGTCCAGCCTGAAGTCCAGTGAATGCCTGGTCCCCATCAGCACAGAGGCCAGCCCAGCTCTGTCACCCAGCTAAGGAGGGTCAGCTAGTAGCCTGCCAACCCAGGCCTAAGGAGGGGTGGGGCACAGGCAAGGGGGACAAGGTCAGCCTCCTGCGACCTCACCCTCGCCCTGCCCCCGCTCAGCTCATCCTCCAC

Function

GO: NA

KEGG:

id description
K24787 RUNDC3; RUN domain-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20376 lncRNA upstream 263416 33328797 ~ 33333746 (+) True AMCG00016880
TU20374 lncRNA upstream 268820 33325094 ~ 33328342 (+) True G16395
TU20321 lncRNA upstream 416723 33180239 ~ 33180439 (+) True G16351
TU20320 lncRNA upstream 417222 33179705 ~ 33179940 (+) True G16350
TU20283 lncRNA upstream 614832 32981779 ~ 32982330 (+) True G16323
TU20498 lncRNA downstream 29004 33646488 ~ 33648455 (+) False AMCG00016898
TU20509 lncRNA downstream 33597 33651081 ~ 33651289 (+) True G16512
TU20546 lncRNA downstream 375698 33993182 ~ 33995382 (+) True G16542
TU20553 lncRNA downstream 475792 34093276 ~ 34099596 (+) True AMCG00016909
TU20554 lncRNA downstream 475792 34093276 ~ 34098392 (+) False AMCG00016909
AMCG00016903 mRNA upstream 50 33580309 ~ 33597112 (+) True AMCG00016903
AMCG00016900 mRNA upstream 17057 33569412 ~ 33580105 (+) True AMCG00016900
AMCG00016890 mRNA upstream 48518 33523888 ~ 33548644 (+) True AMCG00016890
AMCG00016880 mRNA upstream 267599 33320144 ~ 33329563 (+) False AMCG00016880
AMCG00016882 mRNA upstream 295249 33293053 ~ 33301913 (+) True AMCG00016882
AMCG00016896 mRNA downstream 1808 33619292 ~ 33624535 (+) True AMCG00016896
AMCG00016902 mRNA downstream 8492 33625976 ~ 33628289 (+) True AMCG00016902
AMCG00016898 mRNA downstream 12528 33630012 ~ 33650080 (+) True AMCG00016898
AMCG00016897 mRNA downstream 35433 33652917 ~ 33662307 (+) True AMCG00016897
AMCG00016901 mRNA downstream 51109 33668593 ~ 33674361 (+) False AMCG00016901
TU20240 other upstream 739722 32856361 ~ 32857440 (+) True G16289
TU20166 other upstream 1093906 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other upstream 1093906 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other upstream 1093906 32500796 ~ 32503256 (+) False AMCG00016854
TU19916 other upstream 1862846 31728556 ~ 31734316 (+) False AMCG00016830
TU20517 other downstream 51145 33668629 ~ 33672620 (+) True AMCG00016901
TU20550 other downstream 429887 34047371 ~ 34047720 (+) True G16546
TU20555 other downstream 482831 34100315 ~ 34100863 (+) True G16550
TU21320 other downstream 4878567 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 8773813 42391297 ~ 42397787 (+) True G17697

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000034_03396650_03402951.mRNA True 1423 mRNA 0.46 9 CI01000034 3396650 ~ 3403134 (+)