RNA id: TU20517


Basic Information

Item Value
RNA id TU20517
length 656
RNA type TUCP
GC content 0.49
exon number 4
gene id AMCG00016901
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33668593 ~ 33674361 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTCCGAAAGTACAGTCTTTCAGAGCAGAAGTATCGAGGAGAGCAGTGTCTTTGAGAGGAGAGGCCTTTGGGTTTTACACTTCCTTTCGCACTTTTTgggagaaagaaaatcaaaagtCTCTTCAAAATGTTCCGCACGATCTTTGTGCACGCCAAAAAGCACCCCAGCTTGATCCCCCTGTTTGCATTCATCGGCGCTGGAGCTGCAGGGGCCACCTTGTACCTGGCACGACTGGCCCTCCGTAACCCTGATGTGAGCTGGGATCGCAAGAACAACCCCGAGCCCTGGAACAAACTGGGCCCCCAGGAGCAGTACAAGTTCTTTGCTGTGAACATGGACTACAGTAAACTGAAGAAGAATGGGCCTGACTTCTAAGCCCGCCCTTCTCCGGCATTCTTGACCAAGGTCTTCAGAAGCCAATCCGCACAGACCACTCAACCCCCCACAACATCCAACCAAGACAGAAGCAAACCGCACAAAGAGTCCATCTATGTTCAACTTTTGTCCCTTTTGTCCCTTTTGTCCCCCAGCAAGGATGGATCTGTCAGTCTCTGAGTTCCACACAGAACTTTTAATCTTCATTCTGTCATTATTTATGGTTTGTctgcattaaacaaataaagcagcTACCACCTACTGGTTAAATGTGAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20509 lncRNA upstream 17340 33651081 ~ 33651289 (+) True G16512
TU20498 lncRNA upstream 20174 33646488 ~ 33648455 (+) False AMCG00016898
TU20376 lncRNA upstream 334883 33328797 ~ 33333746 (+) True AMCG00016880
TU20374 lncRNA upstream 340287 33325094 ~ 33328342 (+) True G16395
TU20321 lncRNA upstream 488190 33180239 ~ 33180439 (+) True G16351
TU20546 lncRNA downstream 320562 33993182 ~ 33995382 (+) True G16542
TU20553 lncRNA downstream 420656 34093276 ~ 34099596 (+) True AMCG00016909
TU20554 lncRNA downstream 420656 34093276 ~ 34098392 (+) False AMCG00016909
TU20560 lncRNA downstream 431836 34104456 ~ 34105687 (+) True G16552
TU20676 lncRNA downstream 925202 34597822 ~ 34599917 (+) True G16646
AMCG00016897 mRNA upstream 6322 33652917 ~ 33662307 (+) True AMCG00016897
AMCG00016898 mRNA upstream 18549 33630012 ~ 33650080 (+) True AMCG00016898
AMCG00016902 mRNA upstream 40340 33625976 ~ 33628289 (+) True AMCG00016902
AMCG00016896 mRNA upstream 44094 33619292 ~ 33624535 (+) True AMCG00016896
AMCG00016899 mRNA upstream 51145 33597162 ~ 33617484 (+) True AMCG00016899
AMCG00016906 mRNA downstream 88798 33761418 ~ 33773533 (+) True AMCG00016906
AMCG00016905 mRNA downstream 118667 33791287 ~ 33801810 (+) True AMCG00016905
AMCG00016909 mRNA downstream 420682 34093302 ~ 34099580 (+) False AMCG00016909
AMCG00016910 mRNA downstream 496868 34169488 ~ 34191749 (+) True AMCG00016910
AMCG00016913 mRNA downstream 596378 34268998 ~ 34271418 (+) True AMCG00016913
TU20240 other upstream 811189 32856361 ~ 32857440 (+) True G16289
TU20166 other upstream 1165373 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other upstream 1165373 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other upstream 1165373 32500796 ~ 32503256 (+) False AMCG00016854
TU19916 other upstream 1934313 31728556 ~ 31734316 (+) False AMCG00016830
TU20550 other downstream 374751 34047371 ~ 34047720 (+) True G16546
TU20555 other downstream 427695 34100315 ~ 34100863 (+) True G16550
TU21320 other downstream 4823431 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 8718677 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 10453594 44126214 ~ 44131602 (+) False AMCG00017078

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU288702 False 543 TUCP 0.50 4 NC_053132.1 16153785 ~ 16155825 (-)