RNA id: AMCG00016904


Basic Information

Item Value
RNA id AMCG00016904
length 1075
RNA type mRNA
GC content 0.49
exon number 10
gene id AMCG00016904
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33582724 ~ 33596242 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgGCGGATGAGACGCAAGGGTCTAAAGCGAcctgtacttttctttttaagaaaaccaacaaaaaattcAGTGCTCGGAAACGTAAAGCCAGCGACAGTGATAAAGGGAGTAACAGCGATGATGAAGGGAATACGAGCAAGAAGAcggagaaagagaaagtgtcTTCTAGTGACAGTGAGCCCGAAAACAAAGAAGAGAAAGTCACAGTATCTTACAAATCTACCAGATCTGCTAAGCCAGAAGGGCCAGAGGATATGGGCGCCACAGCAGTGTATGAGCTGGACACTGAGAAGGGGAAGGACGCCCAGGCCATCTTCGAGCGCAGCCAGAAGATCCAAGAGGAACTGGTGGGGAAAGAGGATGACAAAATCTACCGGGGGATCAATAACTACCAGAAGTTCATCAAACCAAAGGACACGTCGATGGGCAATGCTTCTTCTGGCATGGTCAGAGCCCCAGAGCACCTGAGGGCCACAGTGCGGTGGGATTACCAACCCGACATCTGCAAGGACTACAAAGAGACTGGCTTCTGTGGCTTCGGGGACAGCTGCAAGTTCTCTCACGACCGATCGGACTACAAACACGGCTGGCAGATCGAGAGGGAACTGGAAGAGGGACGATATGGGGCGAACGATGATGAGAACTACGAGGTGAGCAGCGATGAGGAAGACCTTCCTTTCAAGTGCTTCATCTGCAGGGACTCCTTCAAGAACCCCATCATCACCAAGTGCCGGCACTATTTCTGTGAAGCCTGCGCTCTACAGCATTATCGGAAGTCCAAGCGTTGCTATGTGTGCAACCAGCAGACCAATGGGAGCTGATTGCCAAGATACAGAAACACCAGGCACAGGAGGCACAGGAGGCACAGGAGGCAGCCCACACCCACTCTTCTGATGAAGATTAACAACAATACATCCTTTGTAAATttataccttttgtttttttcttttctccccccgcccccgccTTTTTGGTTTTGGTAACTGTTTAGGATGTATTGTGCAGTCATAGTTTGACTTGTTTTGGAATAAAGTGTActgtttttataaatgaagCAGCCTTGTTAGGATTACA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13127 RNF113A, CWC24; RING finger protein 113A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20405 lncRNA downstream 254383 33325086 ~ 33328341 (-) True G16422
TU20357 lncRNA downstream 290475 33292031 ~ 33292249 (-) True G16378
TU20356 lncRNA downstream 298497 33284014 ~ 33284227 (-) True G16377
TU20354 lncRNA downstream 326342 33255653 ~ 33256382 (-) True G16375
TU20285 lncRNA downstream 598260 32984254 ~ 32984464 (-) True G16325
TU20499 lncRNA upstream 31858 33628100 ~ 33628919 (-) True G16502
TU20502 lncRNA upstream 37885 33634127 ~ 33634339 (-) True G16505
TU20506 lncRNA upstream 44956 33641198 ~ 33641979 (-) True G16509
TU20507 lncRNA upstream 46736 33642978 ~ 33643661 (-) True G16510
TU20508 lncRNA upstream 47967 33644209 ~ 33648440 (-) True G16511
AMCG00016892 mRNA downstream 7428 33554101 ~ 33575296 (-) True AMCG00016892
AMCG00016895 mRNA downstream 62650 33513627 ~ 33520074 (-) True AMCG00016895
AMCG00016891 mRNA downstream 76386 33489013 ~ 33506338 (-) True AMCG00016891
AMCG00016894 mRNA downstream 103269 33474010 ~ 33479455 (-) True AMCG00016894
AMCG00016893 mRNA downstream 108913 33439552 ~ 33473811 (-) True AMCG00016893
AMCG00016907 mRNA upstream 280861 33877103 ~ 33880678 (-) True AMCG00016907
AMCG00016908 mRNA upstream 404355 34000597 ~ 34008800 (-) True AMCG00016908
AMCG00016911 mRNA upstream 618657 34214899 ~ 34263010 (-) True AMCG00016911
AMCG00016931 mRNA upstream 1495211 35091453 ~ 35096502 (-) True AMCG00016931
AMCG00016936 mRNA upstream 1639350 35235592 ~ 35245651 (-) True AMCG00016936
TU20442 other downstream 69145 33488725 ~ 33513579 (-) False AMCG00016891
TU20415 other downstream 151639 33426488 ~ 33431085 (-) False AMCG00016889
TU20326 other downstream 403841 33176076 ~ 33178883 (-) True G16356
TU20188 other downstream 1079472 32497507 ~ 32503252 (-) True AMCG00016859
TU20574 other upstream 510448 34106690 ~ 34107941 (-) True G16563
TU21119 other upstream 4161915 37758157 ~ 37758471 (-) True G17032
TU21144 other upstream 4431241 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other upstream 4458423 38054665 ~ 38058939 (-) False AMCG00016959
TU21619 other upstream 7620409 41216651 ~ 41217231 (-) True G17421

Expression Profile