RNA id: AMCG00016905



Basic Information


Item Value
RNA id AMCG00016905
length 408
RNA type mRNA
GC content 0.55
exon number 4
gene id AMCG00016905
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33791287 ~ 33801810 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTGAGTGTGGTGCAGGACTCGGTGAACATCTCTGGTCAGAATACTATGAACATGGTGAAAGTGCCAGAGTGTCGTCTGGCGGACGAGCTGGGTGGTCTGTGGGAGAACTCGCGCTTCACGGATTGCTCCCTGTGCGTGGCTGGTCAGGAGTTCCAGGCCCACAAAGCCATCCTTGCAGCTCGGTCGCCTGTGTTCAGCGCCATGTTCGAGCATGAAATGGAGGAGAGTAAAAAGAACCGGGTGGAAATCAACGACGTGGAGCCCGAGTATGCCCTGGAGCGTTTGAAGGTGATGTGTGAAGATGCCCTTTGCAGCAATCTGTCAGTGGACAACGCAGCCGAGATCCTGATCCTGGCCGATTTACACAGCGCCGACCAGCTCAAGACACAGGCGGTAGACTTCATTAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU20509 lncRNA upstream 139998 33651081 ~ 33651289 (+) True G16512
TU20498 lncRNA upstream 142832 33646488 ~ 33648455 (+) False AMCG00016898
TU20376 lncRNA upstream 457541 33328797 ~ 33333746 (+) True AMCG00016880
TU20374 lncRNA upstream 462945 33325094 ~ 33328342 (+) True G16395
TU20321 lncRNA upstream 610848 33180239 ~ 33180439 (+) True G16351
TU20546 lncRNA downstream 191372 33993182 ~ 33995382 (+) True G16542
TU20553 lncRNA downstream 291466 34093276 ~ 34099596 (+) True AMCG00016909
TU20554 lncRNA downstream 291466 34093276 ~ 34098392 (+) False AMCG00016909
TU20560 lncRNA downstream 302646 34104456 ~ 34105687 (+) True G16552
TU20676 lncRNA downstream 796012 34597822 ~ 34599917 (+) True G16646
AMCG00016906 mRNA upstream 17754 33761418 ~ 33773533 (+) True AMCG00016906
AMCG00016901 mRNA upstream 116926 33668593 ~ 33674361 (+) False AMCG00016901
AMCG00016897 mRNA upstream 128980 33652917 ~ 33662307 (+) True AMCG00016897
AMCG00016898 mRNA upstream 141207 33630012 ~ 33650080 (+) True AMCG00016898
AMCG00016902 mRNA upstream 162998 33625976 ~ 33628289 (+) True AMCG00016902
AMCG00016909 mRNA downstream 291492 34093302 ~ 34099580 (+) False AMCG00016909
AMCG00016910 mRNA downstream 367678 34169488 ~ 34191749 (+) True AMCG00016910
AMCG00016913 mRNA downstream 467188 34268998 ~ 34271418 (+) True AMCG00016913
AMCG00016914 mRNA downstream 492403 34294213 ~ 34296833 (+) True AMCG00016914
AMCG00016912 mRNA downstream 509058 34310868 ~ 34340346 (+) True AMCG00016912
TU20517 other upstream 118667 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 933847 32856361 ~ 32857440 (+) True G16289
TU20166 other upstream 1288031 32499056 ~ 32503256 (+) True AMCG00016854
TU20550 other downstream 245561 34047371 ~ 34047720 (+) True G16546
TU20555 other downstream 298505 34100315 ~ 34100863 (+) True G16550
TU21320 other downstream 4694241 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 8589487 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 10324404 44126214 ~ 44131602 (+) False AMCG00017078

Expression Profile