RNA id: AMCG00016906


Basic Information

Item Value
RNA id AMCG00016906
length 660
RNA type mRNA
GC content 0.54
exon number 5
gene id AMCG00016906
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33761418 ~ 33773533 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAAGGGTTCCGAGTCCTCCTCCTCCCGCGGAAATGTCAAGCGGGCCCGTGGCTGAGAGCTGGTGTTATACTCAGATTAAAGTGGTGAAGTTTTCCTACATGTGGACCATCAACAACTTCAGCTTCTGCCGGGAGGAGATGGGCGAGGTGATCAAGAGTTCAACTTTCTCATCAGGAGCCAATGACAAACTGAAATGGTGTCTGAGAGTGAACCCGAAAGGCCTGGACGAGGAGAGTAAAGACTACTTGTCCTTGTACTTGCTCCTGGTCAGCTGTCCCAAGAGTGAAGTGCGCGCCAAGTTCAAGTTCTCCATCCTCAATGCCAAGGGAGAGGAGACCAAAGCCATGGAGAGCCAGAGGGCATATCGGTTCGTCCAGGGGAAGGACTGGGGCTTCAAGAAGTTCATCAGGAGAGACTTCCTGCTGGACGAGGCCAATGGGCTGCTGCCTGACGACAAACTTACCCTATTCTGTGAGGACTCGGTGACGGCGGGAGAAGGGCTGGAATCGGTGCTGGGACCAGCGGGGAAACAGTGTGCGCTGCTGGGGGTTGGCAGGAATCGCAGTGTTCGCCAAATTGCGGCAGAGAAAACAGCACAGCGGTCGGTAATGAGATCTGCACTTCTTCGGTACCCCTTCAAGAAAGCACTAAAGTAG

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0016607 nuclear speck cellular_component
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component

KEGG:

id description
K10523 SPOP; speckle-type POZ protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20509 lncRNA upstream 110129 33651081 ~ 33651289 (+) True G16512
TU20498 lncRNA upstream 112963 33646488 ~ 33648455 (+) False AMCG00016898
TU20376 lncRNA upstream 427672 33328797 ~ 33333746 (+) True AMCG00016880
TU20374 lncRNA upstream 433076 33325094 ~ 33328342 (+) True G16395
TU20321 lncRNA upstream 580979 33180239 ~ 33180439 (+) True G16351
TU20546 lncRNA downstream 219649 33993182 ~ 33995382 (+) True G16542
TU20553 lncRNA downstream 319743 34093276 ~ 34099596 (+) True AMCG00016909
TU20554 lncRNA downstream 319743 34093276 ~ 34098392 (+) False AMCG00016909
TU20560 lncRNA downstream 330923 34104456 ~ 34105687 (+) True G16552
TU20676 lncRNA downstream 824289 34597822 ~ 34599917 (+) True G16646
AMCG00016901 mRNA upstream 87057 33668593 ~ 33674361 (+) False AMCG00016901
AMCG00016897 mRNA upstream 99111 33652917 ~ 33662307 (+) True AMCG00016897
AMCG00016898 mRNA upstream 111338 33630012 ~ 33650080 (+) True AMCG00016898
AMCG00016902 mRNA upstream 133129 33625976 ~ 33628289 (+) True AMCG00016902
AMCG00016896 mRNA upstream 136883 33619292 ~ 33624535 (+) True AMCG00016896
AMCG00016905 mRNA downstream 17754 33791287 ~ 33801810 (+) True AMCG00016905
AMCG00016909 mRNA downstream 319769 34093302 ~ 34099580 (+) False AMCG00016909
AMCG00016910 mRNA downstream 395955 34169488 ~ 34191749 (+) True AMCG00016910
AMCG00016913 mRNA downstream 495465 34268998 ~ 34271418 (+) True AMCG00016913
AMCG00016914 mRNA downstream 520680 34294213 ~ 34296833 (+) True AMCG00016914
TU20517 other upstream 88798 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 903978 32856361 ~ 32857440 (+) True G16289
TU20166 other upstream 1258162 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other upstream 1258162 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other upstream 1258162 32500796 ~ 32503256 (+) False AMCG00016854
TU20550 other downstream 273838 34047371 ~ 34047720 (+) True G16546
TU20555 other downstream 326782 34100315 ~ 34100863 (+) True G16550
TU21320 other downstream 4722518 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 8617764 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 10352681 44126214 ~ 44131602 (+) False AMCG00017078

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051253 False 2394 mRNA 0.48 12 NC_007114.7 20658219 ~ 20793655 (-)
grasscarp (Ctenopharyngodon idella) CI01000034_03533995_03552021.mRNA True 876 mRNA 0.47 6 CI01000034 3533995 ~ 3552105 (+)