RNA id: TU20554


Basic Information

Item Value
RNA id TU20554
length 2340
lncRNA type sense_over
GC content 0.42
exon number 4
gene id AMCG00016909
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 34093276 ~ 34099596 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTGCGTGTGTTTCCTCACCGAGACAGCGGGTTTGCACGGCAGAGAGAAGAGACGAGCATGGGCGTGCAAGTGCGGGTTGAATACTGTGGCTCATGAGGCTATGAGCCCCGCTATCAGGAGCTGGCGCAGGTGGTGTCTGCGGAGTTCACTGATGCGGAGGTGTCCGGCTTCGTTGGCAGAGCAGCTTTGAAATTGAGATCAATGGACAGCTGGTGTTCTCCAAGCTGGAAACCAGTGGCTTTCCTTATGAGGATGACATCATGAATGCCGTTCAGAAAGCCCATGACGGGGAGATGGTAGAAAAGATCACCAACAGCCGTCCCCCCTGTGTCATCCTGTAACCTGGGCAGCAGTGTCAGGTGTCAGCCCCACCTCCCTCCTCATGAAGAACAGAAGTACCTCTGAGCACCTCCAAGCATCCACAGCACCAGCACTTGGACAGAATTGGGGGGGAAAGAATGACAGAAAGATGCAGAGTCTCATGCACACTGCAAAGAAAACTTGTTCAAAAGgcaaaaataatttgattagatttaaatagttttcagtTGAAAGATTGATGCACAGTCTTTTTCATCAAAAGGTTTATTGCAATGGTAATTTGATGCAttacaacaaaatgtacttttaggATTGGTTCACAACTACATAATTGGCACTGAATTTTACCTTCGCAAAAGTGATATACAGCTTACAGTTCAGTGTCTCTGTAATCAGCCCTGATGGACAAGCACTGCAGCGTCACTGTAAACCCACCAGTTAGAAATCTGAAAATGGATTAAAAACAGAGAgccattttaaattagatataaaGTGATTGGACTATTTTTCAACTTTAACATTCAGTATCTGCAACTATAGAGAAAGCAGCAACTGTGTGGTGAGTTCATGATCTTGGCTATTCTCATGCACCTCTGAAGCTGCATAATGGCAATAACCAGCCAGCTAGAGGATACATTTGAACAGAAGATAGAGAAGAATGGCCAGGAAACCAGAGTGAGGACATTGCATCTACCATGCAGTGCTGTAGTGAGGCTTAGGTGttgtctgtttgattgtttcctcAGGTCATTGTGTTGATAAATACATTGTTGCTTGTGCTGGAGGTTTCACTGCCTCTCCCTGGTCTGCATCTTTTGAGGGGGGTCAGGTCCTTTATGATTActttaactgaaatgtgaaGGTTAAGGTTTGAGCTAGCCGGCCCTGACCCCCACATCAAGAGGACAGCACTTGGAGAGGTCAGAGGTGTGTGGAGGGGGACTCTTTCTCAACCCACTCCCAGCCTGGGGACACTGAAACACTGCTCAGTGAGTTTGTTATGAGTGGTGAACTCCAACCCTCTCCCTAGGTCTAGGTCCCTCAGCCCTGGCAGTGAATACAAGTAGATTTGGAGTTGAGGATAGGAAAGAATAAGTGGAGTACAGACACTGTTTTGTAACTGCATGATTATGACTTCAGTGTAAATGTCTGACCCAAGTGGACTGAATAAGATGTGTAAGTGTACTAATATATGTTTCCTGatttattcataaatatgcAGTGTCTGTTCTGTTTATTAGGAGCAAAACAGCTTGATAAAACATACATAGGAATTTCTGTTTCTGAAAGTATCAGACTGACTAGTGTCTCTTCATAATATAGTGGACAATGCTCACAGCGATCACAGTTATATGGATCAACCGCCTATATGGATCAAAACGCTTGGGACAGAATCGTTCCTATACAAATGCTGGTTTAAATAATTCGCTTATAATGTTCATTTTGggtcttttcatacatttcaacatatggagaaaaataaataaactgatggATGTGATCGCAATAAGCGGTCGCCACTACTAAATAAAGTCTAAACATAGATTAGTCTTAATTTGATAGCTAGAATAATCTCATGCAAGTTAGTAAAAAGTGAACTTGGTTTTGGATAAAACCCATGATCCAGGCATCAATGGACAAGTTTGTGAAATGACTTTTCCAGGCGGCACAGAGCCAACACACAATACAGAGGTAGCCTCATTTTGTTGTAGGCTAGTTATTGTTatgcagtttttatattttgactaAGATCAGAATATTTTAGGATTACGTTTGTTCTCAAACTCTGCTACCATTGGCATAGATAGCCTACagtttattcatttgaaatgcactgaaaccACCGGCAAGCTGTGGTTTATGGCCTAGCCTATTAACAAGGTAATCagtgaaatcaatcaattaataaactCGTGCTGAACCAAAAAGTCATAAGTGTATAGATCACAAAATCACGtgtcaaaaataaagaaaatcaaacaaacgtgttagatatgtgtatataaaacaaatacNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20546 lncRNA upstream 97894 33993182 ~ 33995382 (+) True G16542
TU20509 lncRNA upstream 441987 33651081 ~ 33651289 (+) True G16512
TU20498 lncRNA upstream 444821 33646488 ~ 33648455 (+) False AMCG00016898
TU20376 lncRNA upstream 759530 33328797 ~ 33333746 (+) True AMCG00016880
TU20374 lncRNA upstream 764934 33325094 ~ 33328342 (+) True G16395
TU20560 lncRNA downstream 6064 34104456 ~ 34105687 (+) True G16552
TU20676 lncRNA downstream 499430 34597822 ~ 34599917 (+) True G16646
TU20699 lncRNA downstream 637945 34736337 ~ 34736549 (+) True G16668
TU20725 lncRNA downstream 677433 34775825 ~ 34777047 (+) True G16692
TU20731 lncRNA downstream 722805 34821197 ~ 34821413 (+) True G16698
AMCG00016905 mRNA upstream 291466 33791287 ~ 33801810 (+) True AMCG00016905
AMCG00016906 mRNA upstream 319743 33761418 ~ 33773533 (+) True AMCG00016906
AMCG00016901 mRNA upstream 418915 33668593 ~ 33674361 (+) False AMCG00016901
AMCG00016897 mRNA upstream 430969 33652917 ~ 33662307 (+) True AMCG00016897
AMCG00016898 mRNA upstream 443196 33630012 ~ 33650080 (+) True AMCG00016898
AMCG00016910 mRNA downstream 71096 34169488 ~ 34191749 (+) True AMCG00016910
AMCG00016913 mRNA downstream 170606 34268998 ~ 34271418 (+) True AMCG00016913
AMCG00016914 mRNA downstream 195821 34294213 ~ 34296833 (+) True AMCG00016914
AMCG00016912 mRNA downstream 212476 34310868 ~ 34340346 (+) True AMCG00016912
AMCG00016916 mRNA downstream 261835 34360227 ~ 34435938 (+) True AMCG00016916
TU20550 other upstream 45556 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 420656 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 1235836 32856361 ~ 32857440 (+) True G16289
TU20164 other upstream 1590020 32499576 ~ 32503256 (+) False AMCG00016854
TU20555 other downstream 1923 34100315 ~ 34100863 (+) True G16550
TU21320 other downstream 4397659 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 8292905 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 10027822 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 10556260 44654652 ~ 44656098 (+) True G18192

Expression Profile