RNA id: AMCG00016911


Basic Information

Item Value
RNA id AMCG00016911
length 4793
RNA type mRNA
GC content 0.46
exon number 21
gene id AMCG00016911
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 34214899 ~ 34263010 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTGATCGGAGTCCTTACATTTGGTGACGTCACTTCGTGCTGGCGATCAGCTGACGTTTCCTGAGGAGCACGAAGGAGATCGGGAAGTCTTCAGTTACAGACAAGAAGACATATTTTTACCCCTAGACAACCGAGGCCCTATCTCCTGTGCCATCATGGGGGAGTTATTTCGAAGTGAGGAGATGACATTGGCTCAGCTCTTCCTCCAATCAGAAGCTGCGTATTGTTGTGTCAGCGAACTGGGGGAACTTGGAATGGTCCAGTTTCGTGATCTCAATCCGGATGTGAACGTGTTCCAGAGGAAGTTTGTCAATGAAGTGAGGCGATGCGAAGAGATGGACCGCAAACTCCGGTTTGTGGAGAAGGAGATTAAGAAAGCTAACATCCCAATTGTGGACACAGGGGAAAACCCTGAGGTGCCCTTTCCCAGAGACATGATTGATTTGGAGGCCACTTTCGAGAAGCTGGAGAACGAACTGAAGGAGATCAACACCAACCAGGAGGCCCTGAAGAAAAACTTCCTAGAGCTGACAGAGCTCAAGCACATCTTGCGCCGGACGCAGCAGTTTTTCGACGAGGCTGAATTGCATCATCATCAGCAGATGGCGGATCCTGACTTGCTGGAGGAGTCTTCCTCTCTGCTGGACCCAAGTGAAGTGGGCAGAGGAGCCCCGCTTAGGCTGGGGTTTGTGGCCGGGGTCATCAACCGGGAGCGCATCCCCACCTTTGAGAGGATGTTGTGGAGGGTGTGCAGAGGCAACGTGTTCCTGCGGCAGGCGGAAATCGAGGACCCACTGGAGGACCCCACTTCGGGAGATCAGGTGCACAAGTCGGTGTTCATCATCTTCTTTCAAGGCGACCAGCTGAAGAGCAGAGTCAAGAAGATCTGTGAGGGATTCCGGGCGTCCTTGTACCCATGCCCGGAGACCCCGCAGGAGAGAAAGGAGATGGCTGCTGGAGTCAACACCAGGATTGACGACCTACAGATGGTCCTCAATCAGACGGAGGACCATCGGCAGAGGGTCCTGCAGGCCGCAGCCAAGACTGTGAGAGTTTGGTTCATCAAGGTGCGCAAGATGAAAGCCATCTACCACACCCTGAACCAGTGCAACATTGACGTCACCCAGAAGTGTCTGATCGCAGAGGTGTGGTGCCCCGTCACAGACCTGGACTCCATTCAGTTTGCCCTGCGTCGAGGAACTGAGCGCAGTGGCTCTACTGTTCCCTCCATCCTCAACAGGATGCAGACCAAGCAGACCCCTCCCACCTACAATAAGACCAACAAATTCACCTCGGGATTCCAGAACATTGTGGACGCTTATGGCATCGGCACTTACAGGGAGATCAACCCAGCTCCGTACACTATCATCACATTCCCCTTCCTGTTTGCTGTCATGTTCGGGGACTGCGGCCACGGTGTCCTGTTGACATGCTGCGGTGTTTGGCTGATTCTCAAGGAAAGCCGTATTCTCTCCCAGAAAACTGAAAACGAGATGTTTAGCATGATCTTTGCTGGACGTTATATCATCCTTATGATGGGAATCTTCTCCATCTACACCGGCCTGATCTATAACGACTGCTTCTCCAAGTCCCTCAACATATTTGGGTCGGCCTGGAGTGTGCGGCCCATGTTCACACAAGGCAACTGGTCGAACGCAGTACTAGAAGGCAACGCTGTGTTACAACTGGATCCGGCTGTACCAGGAGTCTTCAGTGGACCCTATCCAGTGGGAATAGATCCGATCTGGAACATCGCCACAAATAAACTGACCTTCCTCAACTCGTTCAAGATGAAGATGTCTGTCGTCGTGGGCATCATCCACATGCTCTTTGGTGTCACCCTCAGCCTCCTCAACCACATGTACTTCAAGAAGCCCCTCAACATCTTCCTGGGCTTTATCCCCGAGATCATCTTCATGGCCACCCTGTTTGGATACCTGGTGGTCATGATCTTCATCAAGTGGGGGGCCTATGATGCATCCACCTCCAAAGTTGCCCCCAGCCTCCTCATCCACTTCATCAACATGTTCCTGTTCAGCTACGGTGACAGCTCCAACCAAATGCTCTATAGAGGACAGATGGGAGTCCAGTGTTTCCTGGTTATATTCGCTTTGCTGTGTGTTCCTTGGATGCTGCTGTTGAAACCACTGGTTCTCAGACACCAGTACCTGAGACGGAGGAATCTGGGGACCCACAACTTCGGTGGGATCAGGGTCGGCAACGGTCCGACAGAGGAGGATGCCGAAATTATTCAGCACGACCAGCTGTCCACTCACTCGGAGGACGAGACCGAATTTGACTTTGGGGACACTATGGTCCACCAGGCCATCCACACCATTGAGTACTGCCTGGGCTGTATCTCCAACACTGCCTCCTACCTGCGCCTGTGGGCCCTCAGCTTGGCTCATGCCCAGTTATCGGAGGTGCTGTGGACCATGGTGATGCACACTGGGCTTTCAGTAGGCAGTTTTGGCGGCTGCATCATCTTGTCTTTCATCTTTGCCGCCTTTGCCTGCCTCACTGTAGCCATCCTGCTGGTGATGGAGGGGCTCTCTGCCTTCCTGCACGCCCTGCGATTGCACTGggTGGAGTTCCAGAATAAGTTCTACACCGGGCAGGGCTTCAAGTTTGTTCCCTTTTCCTTCGAGAGCATCCTTGATGGAAAGATTGATGACTAGGCATGTCCCATCCTCGACCTCCCCCCCACCACGAGAGATGATGTTGTGCAGTGTTTGTGAGTCATGCAGTAGTTGGCATCTCATTAGAATCCTTGTTGATCGTTGTGCATTCCCAACAAACCATGTAACAGTGTGCACTGACATAAAAATCGCCTATTTGCTGTGGtgacttttttcattattattattattgaataacttattgatttgttttctcatcTCAATTTCTCATCTCATGTGTTGGAACAGAAAAAGGGTATGCAGTACTTGCTTGGTGGACTAACTCACTTCTATAAATGCACTTTGCTATACTTTGGCCTGTTAAGCTAGGCTGGGCATTTTATTCAGgaaagataaaaaacaaaagaaaactgttaattagattttttttcttctgaaaaaggacaaaaatgaACCCAAAGTATAGGTTAAAGTGGGATATTAAGGAACAATATATCAAaaggttaaaaataacaaaaaacaaaaatatgagttgatttaaaataatctgatttaACCCCTAAGATACCAGGCTGGAGAGCAATATATTATCCTGATCTGTCAGGCCTCTGTACATATATGTGATGCTGGATTCATGCCTGTCTTGATATGCATTTTGTCTTTTGCAAATGAATATTACCGAACTGGTACTCTCTGCCCAGTAAAGACTCAATTTATTGACAACGAATTAAAACTGTTTAACACTAATCCACAACAAGGTTCTCTCAATGCAAAGTGGATGCTTTTTGGCAGCCAACCCACAACAAGTCACCTGTAATCATTCAAAGGGAATTAAAACTTGCATGCCATAGAGTAGGTGGTCTTTAGCCAGAGATCTGAGAAAATAATGTAGGCTTCTACTTTGTGATAAATACAATATCTGTTTTAACCATTAAACCATTTGAATACCGTATTGCAGTCCCCACCCAAGTGTTGTATTTAACTGCTCCTGTTTGTGTTCTAATTTATATCTGACCCCTCACCCCCTTGTCTGCTCATATCAAatcagtttgtttatatttaaactagAAAACTGAATctagattatgtttttttttttattattattttttgtatcatcATTATTTGTGGCTGCATTCACTCAAACAAattcattataataacatttgCTGCTGTGAAATAAGCCTGCGTCGTCTTATTGGGGTCAGAAATCAGGTCAATTTGAGAATACTCTGTGTATTAAAATTCAAAGTTCAGCAATTTCAACTGAGCCAGAAACCCTATGCCTTGGCCAGTCACAAAGATCTAATCTTTGATCACAGGCATAAACAGTACTTTGGCAATGCAGTCATTTAGAAGAGTGGATTTCCTGATCTAGTTTagtatgtttagttttttgtttgtgttctatTCAGTGCGGTTTGTATTTATATCAAGATTGCCCTTTTGGTTCCCTTATATGGTGTGCATTTCTTGCACATGGAATATGAATTGGATCTGTAAGTCTCACCGCAAGTCAAACCATACTATGGGTACTTTGATGCTGAAGCCGTTACAAAGAAGATTTgcaacctttatttatttgcgTATTTATTCGTGGGATTTGGAGAATGTCTTTTATTTATACTAAATGCTGGCACACCTGCACTACCTCTTCTGAAAGGCTGCATTGCTATTGATGACCCTGGGACCCAGTTAAATACAGATGTACGGACATTATTCAATGGCAAATATTCTCCTGTTCCAGAAGCCTTAGTGAGCAATGGACAATTAAACatatcaattaaacaaaacaaaaaaacatcacaataaaGAAATATCTGCTAATGTACAAGTGGGTGTCTTATCTATTCTGCAAGGTGTGTTCTGTTATAGTAGTAGATATATTAGTGTGTAATGTACCTGCAGTGTTCTGTGATCAAGCAGTGGATGTGATTTTCATTTATGCCAGGTGACTCTCACTGAATGTTCACAGTGGTAAAAGTAtaaatggggggtggggttctgtctgtctgtctatcggCTGGATGGAAGTTATTTCCATGAACATGGCAATCTGATGGGAGCCTTCGGTTTCGTAAAGTGTCTTTTCTGTGTTCTCATTGTGATGGTTGTGTTTGTGCATTAATATGATTAAAGAAGAGAAGGCTGGGG

Function

GO: NA

KEGG:

id description
K02154 ATPeV0A, ATP6N; V-type H+-transporting ATPase subunit a

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20581 lncRNA downstream 20589 34191472 ~ 34194310 (-) True G16567
TU20569 lncRNA downstream 113327 34101287 ~ 34101572 (-) True G16561
TU20568 lncRNA downstream 113693 34100921 ~ 34101206 (-) True G16560
TU20564 lncRNA downstream 114676 34096312 ~ 34100223 (-) True G16556
TU20562 lncRNA downstream 219639 33993190 ~ 33995260 (-) True G16554
TU20624 lncRNA upstream 33249 34296259 ~ 34300803 (-) True G16605
TU20660 lncRNA upstream 209326 34472336 ~ 34473547 (-) True G16635
TU20680 lncRNA upstream 295569 34558579 ~ 34561068 (-) True G16650
TU20683 lncRNA upstream 334188 34597198 ~ 34599931 (-) True G16653
TU20684 lncRNA upstream 386943 34649953 ~ 34650174 (-) True G16654
AMCG00016908 mRNA downstream 206099 34000597 ~ 34008800 (-) True AMCG00016908
AMCG00016907 mRNA downstream 334221 33877103 ~ 33880678 (-) True AMCG00016907
AMCG00016904 mRNA downstream 618657 33582724 ~ 33596242 (-) True AMCG00016904
AMCG00016892 mRNA downstream 639603 33554101 ~ 33575296 (-) True AMCG00016892
AMCG00016895 mRNA downstream 694825 33513627 ~ 33520074 (-) True AMCG00016895
AMCG00016931 mRNA upstream 828443 35091453 ~ 35096502 (-) True AMCG00016931
AMCG00016936 mRNA upstream 972582 35235592 ~ 35245651 (-) True AMCG00016936
AMCG00016937 mRNA upstream 1010913 35273923 ~ 35312713 (-) True AMCG00016937
AMCG00016938 mRNA upstream 1132982 35395992 ~ 35399030 (-) True AMCG00016938
AMCG00016940 mRNA upstream 1141620 35404630 ~ 35410252 (-) True AMCG00016940
TU20574 other downstream 106958 34106690 ~ 34107941 (-) True G16563
TU20442 other downstream 701320 33488725 ~ 33513579 (-) False AMCG00016891
TU20415 other downstream 783814 33426488 ~ 33431085 (-) False AMCG00016889
TU20326 other downstream 1036016 33176076 ~ 33178883 (-) True G16356
TU20188 other downstream 1711647 32497507 ~ 32503252 (-) True AMCG00016859
TU21119 other upstream 3495147 37758157 ~ 37758471 (-) True G17032
TU21144 other upstream 3764473 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other upstream 3791655 38054665 ~ 38058939 (-) False AMCG00016959
TU21619 other upstream 6953641 41216651 ~ 41217231 (-) True G17421
TU22128 other upstream 8545701 42808711 ~ 42864616 (-) True G17842

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000339_02534217_02550941.mRNA True 2887 mRNA 0.47 20 CI01000339 2534217 ~ 2551224 (+)