RNA id: AMCG00016916


Basic Information

Item Value
RNA id AMCG00016916
length 1995
RNA type mRNA
GC content 0.53
exon number 17
gene id AMCG00016916
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 34360227 ~ 34435938 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATGTCAAGGTTATGGAGACCCCCAACCTGTCCCTCACTTATGTGGACCAGAGGGGACCGCTAACCCGTGTGGCACCTCCCCATTGTGAGGTCACCCTGAGCTGTGGCACAGGACTCGCCTCAGCTCTTGAACAAGGATCCTTTCTGAGCACAGTGAGCAGCAGTGCAGTGGCTTTTGTGTTTCGCCTGATACAGCACTTACTACAGAGCAACCCAGACCTGGAACTGGTGGTTCTCTGGTTTCTGAGGAATGTGTTAGGGACATTGCTGAACAATGAGGTGATCCCAGAGGTGGATCGTAGGGAGTATAGACATTATTGTGCCGTTGAACTGGCAGCAAAGAACCCAGGTCACACCACACCGTTGATCCAGTGGCTCTCAAGAACAGCGTATGTCCTGCTTTGGGGCCGTGTTGCTTGCTCGTCGAAGCATATGGTCAGGCGGGCTATCAGTGTGGTCAAGCAGGCACTGATGCTCACTAGGAAATCCGAGTATCCATATGCGCCTAGCCAGCTCCTTCAGTCTTACTGCGAATTTGTAGCCCAGCATAGCGTGGTCGGAGGCTGCCAGTCTTTCAACAGGAAATCTCAGAATGCTGGCCAAGAGAGACTTGCACTAGTCCAAGCTAGAACGATCCGATGCCTGGACAAGAAATGTGACGGGGAAGATGTGtcaaAGGTGAAGGAAAGTTTAGGTTTATTTCTAATCTTAATGAGCCCCTGCAGTGCGTACAAACAAGAGCAGGCAAGgCCTCTTTTTCCCCTGAAGGTGACATTTTCCAGGGAAAttacatatgtgtgttttgCCAATCCTTGCCCCAACAAGACCATTGTATTGAGGAAGTTTGCATCTTGGGCACAGAGGAATTTCCCCTCACAAATCagcctcctgcagcagcagctgcacCAGGCCCAGCAGGCTGCAAGGGCCAAGATACTGGACTGTGCTGTTGTCTCATGTCCCTCTCTGTGGAGGCTGATGAGCAGGATCAGCCCCCTGTGCCCCCCTCCCACTATCTCTGGCCCTCCTTTGCCCTCCCACCCTCACCAGGATGCAGGCCAGTGCAGGCCCACACAGCTCGATAAGGTTTCAACTCGGAACAAAGCATGCTGGGAAACTGTCAGCATGAAAGCTGTGCCCAGGCGGCCATCCAGCTCTGCACAGCAGTGGAAGCAGCGGGAGACGTCTGCCGGAGACAGATCCGTGGAGTTGTCATTTCCTAATCTTCACTGGAATGGGCAACAGGCCATCAGAGAGGCACCTCAGGGGCAAAAGGGGGAGAGGAGAAAACACTCCAAAACAGTGTTAAATAGagCAAAGGCGGTCAGGTCCCTGTTACAGTTCTTCCCTGCTGATATAGATTCGGGTCTGTTTCCCCCCCGAGTGACTATCCCTGCCTTGTGTACTCATCTGGCTTCTTCAATTGATCAGAGAAGAAAAGCAGTTGCTGACTTGTTGACAGTGCCAGGCAAGCAAGCCTTGGGCTTAGAACTTTTGGAGGAGAACAGCTTAGAGCAAAACCGGGACCACCATGGCCATTTTCCAGCAGCTGCAGGATTACAAAACCCAGACTTAACCTCAAACTTGGACTCGGACCAATTGGTGTATATCGACTGCAAGTGTTTCAGCCacacttgtgtgtgtgacattCCTGGCTGTGCTGAGCTGCAGGCCTGTGTAGCATCTGTCATGTCATACTCCACCTACATGCAGCCCCCCAGCAGAGCCAGGAAGTCCTATGCCGACCACCATGGGTTTGTGGTGTTACTCTTCCAAATCTCCCTGCTTTTACATGATAACAGAGAGTTGAAATCAGAGACGACACAGAGCACGGCAGGTCGGGAGGAAGCTGGTACCCTGGCAATTGCCGCTTCTCTGTTGGTTTGCTCGAAGCAGCTGACTTCCTGCAAGATTTGCTGCTGCCCCCATCCCCTACTTCCTGTGATGGCGCACACTGGCGTGACGGtgctcactgctgctgccaaCTCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20560 lncRNA upstream 254540 34104456 ~ 34105687 (+) True G16552
TU20553 lncRNA upstream 260631 34093276 ~ 34099596 (+) True AMCG00016909
TU20554 lncRNA upstream 261835 34093276 ~ 34098392 (+) False AMCG00016909
TU20546 lncRNA upstream 364845 33993182 ~ 33995382 (+) True G16542
TU20509 lncRNA upstream 708938 33651081 ~ 33651289 (+) True G16512
TU20676 lncRNA downstream 161884 34597822 ~ 34599917 (+) True G16646
TU20699 lncRNA downstream 300399 34736337 ~ 34736549 (+) True G16668
TU20725 lncRNA downstream 339887 34775825 ~ 34777047 (+) True G16692
TU20731 lncRNA downstream 385259 34821197 ~ 34821413 (+) True G16698
TU20745 lncRNA downstream 655521 35091459 ~ 35094092 (+) True G16705
AMCG00016912 mRNA upstream 19881 34310868 ~ 34340346 (+) True AMCG00016912
AMCG00016914 mRNA upstream 63394 34294213 ~ 34296833 (+) True AMCG00016914
AMCG00016913 mRNA upstream 88809 34268998 ~ 34271418 (+) True AMCG00016913
AMCG00016910 mRNA upstream 168478 34169488 ~ 34191749 (+) True AMCG00016910
AMCG00016909 mRNA upstream 260647 34093302 ~ 34099580 (+) False AMCG00016909
AMCG00016915 mRNA downstream 8463 34444401 ~ 34472634 (+) True AMCG00016915
AMCG00016917 mRNA downstream 45195 34481133 ~ 34499652 (+) True AMCG00016917
AMCG00016918 mRNA downstream 122601 34558539 ~ 34597579 (+) True AMCG00016918
AMCG00016919 mRNA downstream 175705 34611643 ~ 34614856 (+) True AMCG00016919
AMCG00016921 mRNA downstream 221773 34657711 ~ 34660464 (+) True AMCG00016921
TU20555 other upstream 259364 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 312507 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 687607 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 1502787 32856361 ~ 32857440 (+) True G16289
TU20165 other upstream 1856971 32500796 ~ 32503256 (+) False AMCG00016854
TU21320 other downstream 4060113 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 7955359 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 9690276 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 10218714 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 14966781 49402719 ~ 49403634 (+) False AMCG00017173

Expression Profile