RNA id: AMCG00016931


Basic Information

Item Value
RNA id AMCG00016931
length 2878
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00016931
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 35091453 ~ 35096502 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGAAGAGCTGTAAGGTGGTTGTGTGCGGACTGTCCGCCGTCGGCAAAACGGCTGTGCTGGAGCACCTACTCTACGCAAACCACATAGTGCGCTTCTATGACACTCGCGGGCTGAAGGAGGGCGTGGAGTTCCCCCGCCACTACTACTCCTTCGCTGATGGCTTTGTGCTGGTCTACAGCATCGACAACAAGGATTCCTTCAAACGCATGGAGGTCCTCAAGAAAGATATCGACCGATACAGAGACAAGAAGGAGGTGACCATCGTGGTGCTTGGGAACAAGTGCGACCTGCAGGACCAGCGCAGGGTGGACGCCGATGCGGCACAGCACTGGGCCAAGACGGAGAAGGTGCGGCTGTGGGAGGTGTCAGTGGCGGACCGCCGGACACTCATTGAGCCCTTTGTCTTCCTGGCCAGCAAGATGACCCAGCCGCAGAGCAAGTCCTCCTTCCCACTCAGCCGCAACAAGAACAAGGGCAGCGGCTCCCTGGACGGCTGAGGGAGGAGATGAGTCTGTGCAGGAGCCCCAGAGAGCCACACTCAGGACATTCTGGGGGTCACCTGGATCTGAACAGTGCAGACCTCTAGAActgcaacacacaaaacacagggggcagtgtgtgtgtgtgtgtatgtatacatgtatgtatacatacatatatatatataatgattatgTACATCCATACACACAGACTTCAAGTGAAAGAGATTAGACTCAAAATATAGCTCAGAATCGAGATCTAAACTGGAAGAATAACCCcaaaaacaacttttatttatgtttgatcAGAATTGGGTTTGGGTTTGGTTGTGGGGCTAAAGTCTTgttacagacaaacaaatacacagtgaCAACACTTGAAACTAGGCTGTCAAGAGctaaaacattttctaattagCCATATCAGGTCATAAATCTAGCAATTATCAGTTATTTCAACTGAAATGCAGATAACTACACTGACTGAATAaggactgaaatatttaaagccGACAGGGTATGCATTTCTGAGGTGGcttagttttagtttattttttacctcagtgtgttttttcttgccAGATCTCTTATAGGTGAACCTCAGGGTTGGGCTCGGGCGCTCCTTACTGTACATTCCAGCTCCAGAGTTGTGCAGAACATGGCCTAAGGCACTGGGACTCCAGCTGACACACTGCTGATGAGTGCCTTCAGTTTATATCAGGGGTCTATAGCCAATTGTTGTTGAgcatttcaaaattacacaaatgcactcaaaaatgttgtaaattactTAAGTATGCATGCTTTTCAGACTATTTATGTATGGGGAACTGTTACACTGGTTTTACTAAGTACTTTGAAGATGTGAAATGTTTGTGATTCATTATTGCGTGAAGCAGTTGCTTCTTATCCCAAATTGTCTGCTTAATATTAAAAGTCCTTTTAGCATTTCAGTGTGGGCATGTGCAGAACAGATTAATAGTGCAAGCACTCTTAAGCCATGAAGCAGCCTTTCTTTTAGGTTTGGTGTTGCTTTTTACTGTGGTTAATAACCATTCCTTTGTCCTCTcaatttccaatttaaatttgtcattttttctcCCCATTGCTATTTTTGTTACACAGTATTATCCTCagagatgaagagagaaaaCTTCCCTTAATAAAGCTTTAAAACTTAGTTTCCATTCAGGACAAATATGCTTAAAccatatttattactactacattaCTAGAAGTATAGATTTGTTGTCCTTTTTACAGTAATTGTACAGTATAAACATAGCTTTCTGTATAACTTGTTTGTGAAGATGCCTGAAATTGATGAAGAAAGCAGACTTCAAATGGCTAAAGCAAAtgaaactgcaaaacaaaatgtctagATATGCCCGTCAACATGAACCACTCTAGTGTACCTCCTTCCTCTGTACTTCTCTAATGTGGCCTAATTGGGATGGAGCTTCTATTGAGAGACTGTGTGCATAAAGGTGTATATGCATTGAAACTGTATAATTGACTTCTTGTGTTCTCAAACTGTAGTACACGTTCCCAGCATTAAGTATTGCATAGACAAAAATATCACACCCTTCAtgtaaaaaacaatgttgtttagTGATTCATGTAGTTTAATAACTCGTGTTCATCAAGCTAGACTTATGTAACAACAATGATGATATCGTTTtacgttttttttcattccaaaaATGTCTGTGTAGCAGTCCAAAGTTTACATCAGACTGACAATCACTGGATAAAATTGTTTGAGATTAAGAGAGTGAATACCTTGGGTAACAGCTGGATGTGTACACCCTCTTAATTCTCCAGTGCCTCTGGGCTTACAGTACATGCAAAGCCTAATGTTGTAAGTACATTGTATAGGTGCATGAGGGTGTAAAGGGGACAACatattctaatacatttttcctAATTGAGAATTCCCAAATTCCCAACAGAAACATTTCAAGATCAAATTAGCTATATATCAATTTATTATGAACATTATTTGCTAGTGCCAAATTAAGTGACCAGTATGTTACGTATCCTGAATAAGAAGCAATGTGTGCCAACCCAGATATTCTGCTTTCTTACCTTTGGTGGAGTTATATTGTTCTTGCTGTATTGTATACTGATCCTGCTCTGTAATTATACTGATTTTCCTATTTTCAACAACACTGGATACATGTCCTCATCTGTGccgtgtttatatattttattagcgTGGGGGACCACTACAATATTGTaaactatattgttttttgtgtatctTGTGTCTTAAAATCACTGAAAGTTCTCATTGTTTTGCTCCTTtcaaaaaataacttttcacaAACAATGACATGTGGGAAGATGTATAAACGtgttttacagattaaaatggGTTTCTTCACTGAAC

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K17197 NKIRAS; NF-kappa-B inhibitor-interacting Ras-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20726 lncRNA downstream 314405 34775825 ~ 34777048 (-) True G16693
TU20712 lncRNA downstream 334448 34754171 ~ 34757005 (-) True G16679
TU20700 lncRNA downstream 354904 34736339 ~ 34736549 (-) True G16669
TU20684 lncRNA downstream 441279 34649953 ~ 34650174 (-) True G16654
TU20683 lncRNA downstream 491522 34597198 ~ 34599931 (-) True G16653
TU20752 lncRNA upstream 19610 35116112 ~ 35118906 (-) True G16712
TU20819 lncRNA upstream 119601 35216103 ~ 35222538 (-) True G16761
TU20851 lncRNA upstream 173615 35270117 ~ 35270539 (-) True G16790
TU20865 lncRNA upstream 265621 35362123 ~ 35362326 (-) True G16804
TU20874 lncRNA upstream 299500 35396002 ~ 35398897 (-) False AMCG00016938
AMCG00016911 mRNA downstream 828443 34214899 ~ 34263010 (-) True AMCG00016911
AMCG00016908 mRNA downstream 1082653 34000597 ~ 34008800 (-) True AMCG00016908
AMCG00016907 mRNA downstream 1210775 33877103 ~ 33880678 (-) True AMCG00016907
AMCG00016904 mRNA downstream 1495211 33582724 ~ 33596242 (-) True AMCG00016904
AMCG00016892 mRNA downstream 1516157 33554101 ~ 33575296 (-) True AMCG00016892
AMCG00016936 mRNA upstream 139090 35235592 ~ 35245651 (-) True AMCG00016936
AMCG00016937 mRNA upstream 177421 35273923 ~ 35312713 (-) True AMCG00016937
AMCG00016938 mRNA upstream 299490 35395992 ~ 35399030 (-) True AMCG00016938
AMCG00016940 mRNA upstream 308128 35404630 ~ 35410252 (-) True AMCG00016940
AMCG00016939 mRNA upstream 315077 35411579 ~ 35420041 (-) True AMCG00016939
TU20574 other downstream 983512 34106690 ~ 34107941 (-) True G16563
TU20442 other downstream 1577874 33488725 ~ 33513579 (-) False AMCG00016891
TU20415 other downstream 1660368 33426488 ~ 33431085 (-) False AMCG00016889
TU20326 other downstream 1912570 33176076 ~ 33178883 (-) True G16356
TU20192 other downstream 2592558 32497507 ~ 32498895 (-) False AMCG00016859
TU21119 other upstream 2661655 37758157 ~ 37758471 (-) True G17032
TU21144 other upstream 2930981 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other upstream 2958163 38054665 ~ 38058939 (-) False AMCG00016959
TU21619 other upstream 6120149 41216651 ~ 41217231 (-) True G17421
TU22128 other upstream 7712209 42808711 ~ 42864616 (-) True G17842

Expression Profile