RNA id: AMCG00016933


Basic Information

Item Value
RNA id AMCG00016933
length 3460
RNA type mRNA
GC content 0.42
exon number 8
gene id AMCG00016933
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 35220562 ~ 35232529 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatttattaaatactgattaatatgcaaaatctaacattatattggctactgaataatcagcaatatagctaatgagtaGATATGTCAAACCCCCTGGTACATTTCCATCTCACCACTTCTGTAACCTTTTGGATGACTCTCAGAAACAGcaggaaggtttgttatcaatatagccatgtttacctcattctctgaaagtgtcaaggcaagggAAATCAAATGTTATGAGAACTGAGTatctctgtctgctacagacttctcagacacaaaaagaaaagcagatacagatacaaaaggaattaatttggataaacccaatatagttgctgatcaatactagacatttttacattatgGACCAGCACCAAATGTGCTATGCACCTACAAAGCTGCACTGGTGTTTAGGAACCACTACCTTCTAACccttttatatttttggttaTCAGTTGATTTAATCCATTCATCAGCTGCACTATTTAGTTAGTGCCTGCACTGTGTCGTTTGGTCTGATAACTGCTGGTTCTGCTGTCCAGATGTACCCCATCACCTGGATACCTCACCAGATGAGGACTGTCGTATCATTTTGTTACCACTTGAAAAAGTATGAGGTTCCAGAACTTGCCAAATCCACAGTGCGCATCCAGGACAGGAAGAGAGTGCAGGAGATTCTGCAGTCCATTCACAATGGAGGACCCAGCAAACTGCAGGTGATTGCTGATTTCGATATGACTCTCACCAAGTTCGCACACAATGGCAAGCGCTGTCCAACCTGTCACAATATCATGGAAAACAGCACTGTTATTAGTGAGGAGTGCAAGAAACAGCTCCAAGGACTGCTTGACAAGTACTATCCCATAGAGATTGATCCCAAACGCACAATCGAGGAGAAGACACCAGAAATGGTGAAATGAGACGGCTACAGGGTTTTCTTTGATGAGCTCAAGAAGCAGAGCATCCCCCTGCTCATCTTCTCCGCGGGGATAGGGGATGTGCTGGAAGAGGTTATCCGCCAGGCTGGGGTCTTCCATCCCAACGTCAAGGTCTTCTCCAACTACATGGACTTTGATGAGAGTGGGATTTTGCAAGCCTTCAAAGGGCAACTGATCCACACATACaacaagagagagggagcgtTGCTGAACTCCGACCACTTCCAGGAACTGAAGAACAAGCGCAACATCATCCTCCTGGGGGACTCCATGGGGGACCTCACCATGGCCGACGGGGTGCATAGCATGGAGAACATCCTCAAAATCGGCTACCTCAACGACAAGgtggaggagagagaggcacagTACATGGACGCCTATGACATCGTACTGGAGAAAGATGAGACTATGGACGTGGTGAACGGGATCCTCAAGTACATTACTGCCAAGaactgagggagagagtggctggggaggaggagggcaaGGCAGAACTGGTACCCACCCTTCCTCATATGCACTTCAATGTGGACTGGTACATCCTGTAAGCTAGACCACATCCACCGTCACAACACATTCTGACAAACATTTGGAACCTGTGATTACGGGTCTCTGGAGGGGCACATCCACACTGGAGAGAACGGCTGGTCAGTACAGCACACTGGGGGCAGGTGATGTCTATTTTAACAAATTCCTTCCAGCATTTTGAGGTATAAAACCTATTGTTAATTACTGGTCACCGTGGTTAGTGATCTCACTGTTATGGTGTGGAATATATGAGGGGTTTCTTACCTTACTTGTGCGTACAGCCGTTGTTTCCCAACCTACTCCAGGTCTTTTAGGCTCTATCAGTCAGTGGTCAAATCTCAGATTTGAACCAAGGCAGCACTCAGGAAAAACCTGTATAATCCAACCTTtcaatctatctatccatccatgcGTTACATTTTTGGAGTGACATGTTTGTGATGTTTAAAGGCCTGACTATGGACaactctttttctttctgtaatgcTCACGTattcttaaaacaataaatattcacaaatgCAGAGTTCTCAAGATGGAACAAACTCCATTATGTCACCTTGATTTAATAGTCTAAGTTCCatgtccattttattttattatttttaacactcTTTTATGAAGGtctatataatgtaaattattgaaTAAGGTTAAAGGGAGAGTGGAAACTATCATTTCAGCACCGGGACCTCTATGTTGACAGGCAGAAATGGAGTCTAAtgctaaattaataattgttcaCAACAGGCAGCTATTTGTTTGGGTCTTTTTCTCTTCACACGTATCCAGAGGCAGTGTTAAACCATattgtatcattttcttttgatcAGGTAGAatccattgtttttttgttttttaccacaAATGGTTCTCAATAGAGCCAGTGTCTTCCAGAAATTGCTGAACATTGCCTCAGACTACGGACAGAGTTTCTACAATGCTGAAATCAGTAACTGAGGACGAGTGGGCAAATTACAGACTTACTGCTAGTGACCTAGGCATAGGTtgggggggtggcggggggggaCTTGTCTCCCTCAGTATTGAGAGAGCATCAGTTTGTTCCCCTCAATCATAGGCGTCCACTGCACTTTATGGAAGACACAGTCAATTCATAGACCTTATGTAACCTTGGCAGCACCCCCCACTTCTGAAACGAAAGTTACGCCACTGCCTTGTGGCATTTTGCTTTCCAGCTTTCGGAGAAGCACAGACACAAGTTTCTCAAGATTTAACCAGACTCCCTGTGTTGTGTTAGCTATCCCATGGATTTCAGTTGACACTCAATAAAGTTTCTCAAAATTTGGACAAATGTTAACCCCACAACGTTAGTTTATGTAGATTAATGTAATGTGTCCTAAACAGGTCAGTAATTTATATTACTGATACATGTATCTGCAATAAGAGCATTACTTAAAGGTTACAAGGAAGAAATGTAAGTATtccatattttatataactgGATGTGTAGTCATATTGAGGATTATAAAGCCCTACTGTAGCTGGTGTGTTCTAAAGCTGACAATATTGGTTGTATACAAAACGTATTACAGATTACTATATTATTGGACTGAAAAATATTCTACACTGCTCATGGATGGGTgtcattttttaagaaaatatgttttggtaATGTATATCTGAAATACAAACGTTTGAACTTTGTTATGCTACAGTTTTAAGTATATTAAGTACATGCCACAGGTTagcaatcagtccagtcaaaccctaagagagatcaggataaatgaggaggaggtactaaagggactagcagaattaaaaaccaacaaatcacctggccagatgggatatttccaacagtacttaaataaatgagggaaattatttataggccgctaactaaattattccaaatgacacttagaacaggggatgtgccaactgactgggagacggcaaatgtcataccaatccacaagaaaggagacaaaactgatccaggaaattacagaccaatcagtctcacctgcattac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20772 lncRNA upstream 16330 35201145 ~ 35204232 (+) False AMCG00016934
TU20745 lncRNA upstream 126470 35091459 ~ 35094092 (+) True G16705
TU20731 lncRNA upstream 399149 34821197 ~ 34821413 (+) True G16698
TU20725 lncRNA upstream 443515 34775825 ~ 34777047 (+) True G16692
TU20699 lncRNA upstream 484013 34736337 ~ 34736549 (+) True G16668
TU20786 lncRNA downstream 8250 35240779 ~ 35241527 (+) True G16731
TU20830 lncRNA downstream 30523 35263052 ~ 35265068 (+) True G16771
TU20835 lncRNA downstream 38104 35270633 ~ 35275819 (+) True G16775
TU20838 lncRNA downstream 46300 35278829 ~ 35279068 (+) True G16778
TU20839 lncRNA downstream 49642 35282171 ~ 35282760 (+) True G16779
AMCG00016932 mRNA upstream 7949 35205880 ~ 35212613 (+) True AMCG00016932
AMCG00016934 mRNA upstream 16332 35158597 ~ 35204230 (+) True AMCG00016934
AMCG00016929 mRNA upstream 78773 35137549 ~ 35141789 (+) True AMCG00016929
AMCG00016930 mRNA upstream 89557 35121947 ~ 35131005 (+) True AMCG00016930
AMCG00016928 mRNA upstream 103894 35097590 ~ 35116668 (+) True AMCG00016928
AMCG00016935 mRNA downstream 14978 35247507 ~ 35260480 (+) True AMCG00016935
AMCG00016941 mRNA downstream 320693 35553222 ~ 35555196 (+) True AMCG00016941
AMCG00016943 mRNA downstream 390821 35623350 ~ 35623650 (+) True AMCG00016943
AMCG00016945 mRNA downstream 542547 35775076 ~ 35785159 (+) True AMCG00016945
AMCG00016946 mRNA downstream 570619 35803148 ~ 35848748 (+) True AMCG00016946
TU20555 other upstream 1119699 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 1172842 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 1547942 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 2363122 32856361 ~ 32857440 (+) True G16289
TU20165 other upstream 2717306 32500796 ~ 32503256 (+) False AMCG00016854
TU21320 other downstream 3263522 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 7158768 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 8893685 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 9422123 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 14170190 49402719 ~ 49403634 (+) False AMCG00017173

Expression Profile