RNA id: AMCG00016936


Basic Information

Item Value
RNA id AMCG00016936
length 3922
RNA type mRNA
GC content 0.49
exon number 10
gene id AMCG00016936
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 35235592 ~ 35245651 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTACACAGATGCTCTTAAATACAGCAGATCGAGCACAGTGGTGTCAACGCTATTTTCTTCATCGGGGGTTGTCTTCGTTCACATGaaagttggggaaaaaaaaaaaaaaagttacgcCCCAAAATCCAGGGCAGCTAAAGCGCAGCCGGAGGCCGCGGACACGTTTACAGAATTCCTCGCcgcgccccccgccccccgcccgCAGGACCGGCACTTCTCTCGGGCTGCGACGGACGGAGGGTCGCACAGCATCTCGGCGCAGTGTCCCGCTTCAGCCAGCAGCACCTCGGCATCTGATTCTACGCTCTGCAGAATCTCCCAGTTAGTTCAGCGCCGAGATGGAGGCGAAGTTTGTCTTGTTGGTTTTCGCTCTAACGGTGGCGCACGTTACGAGCAACCCCGGGCCGTTAGAGGACGTCGTGGTCGAGCGGTATTATATCCCCCAGATCTGCCCCCGGGAAGTCCAGATGGGGGACCATGTCCGTTATCACTACAACGGCTCTTTCACAGACGGCAAGCAGTTCGACTCGAGCCATGAGCGTGCCACTCCATTCAGTGGGCTGGTGGGCATTGGCAGGCAGATCACGGGCATGGACCGTGGCATCCAGGGGATGTGCGTCAACGAGAGGAGGAAGATCACTGTGCCCCCACACCTGGCCTACGGGAGCCTGGGCGCTGGTAACGTCATTCCCCCCGACACCACCCTGGTCTTTGACGTGGTCCTGCTGGACATCTGGAACCCTGAAGACAAGGTGCAGATCCGCACGCTGTACAAGCCCGAGGACTGCAAGCGCACGGTTCAGAACTCTGACTTCATCCGCTACCACTACAACGGCACCCTGCTGGACGGCACCCCCTTCGACTCCAGCTACAACCGGAAACAGACGTATGACACCTACGTGGGCGAGGGCTGGCTAATCAAGGGCATGGAGGAGGGGCTGGTGGGGATGTGTGTGGGAGAGAAGAGGAACGTCGTCATCCCACCCTTTCTGGCCTACGGAGAGAAGGGATACGGCAATGAGATCCCCTCCCAGGCCAGCCTGACATTCGACGTGCTGCTGTTGGATCTGCACAACCCCAAGGATGACGTCACCGTTGAGACGCAGGAGGTGCCCGAGTCCTGCCAGCGCAACTACTCCCGGAACAGCACGTACAACACGTACATCGGGATGGGCTACGTGATCGCAGGCATGGACAAGGGCCTGCAGGGTGTGTGCATCGGGGAGAAGAGGAGGATCACCATGCCCCCCCACCTGGCCTACGGGGAGAGCGGAGCAGGTGAGAGTATCCCTGGTTCGGCAGTGCTGGTGTTTGATGTCCACGTCATTGACTTCCACAACCCCACCGACAAGGTGGAGATACAAACCACCCACAAACCAGCCGACTGCAATGTGACCAGCGCCGCCGACGACATGGAGGCCTTCCTGGGCACCAACAAAGTGATTGACGGGCTGGACTTGGGGATGCAGGGCATGTGCGTTGGGGAGAGGAGGGTGGTGATCGTGCCCCCACACCTCGGGCACGGGGAGGACGGAGACCCCCCCGAGAACCTGTTTGAGGCTCTGGACCTCAACAAGGATGGCGAGGTGCCCCTGGAGGAGTTCTCTGCGTTGATCATGCAGCAGGTGGCAGAGGGTAAGGGTCGGCTGAAGCCAGGCCAGGACGCTGACACCATCATCAAGGACATGTTTGGGAACCAGGACCGCAACAAGGACGGCAAGATCACAGCAGAGGAGCTCAAACTCAAGGTGGACGAGGACGCCGAGAAGGCAAAACACGAGGAGCTGTGAGAGGGCAGagaagagacacagagacaggctgacagggagggagggagggaaacgAAAGGGAGAGTGGCTGACCAGCTCCACACCACAGGCGGCACCCAGAAACACAACAAAGTCCGCCCAGCCAACCTGCAGCAACATCTTCATATCTTCCATCAACAAGATCAACAAGTTTTCcagacaaaaatgttttttactgAACTATTGAAAAGGTAGTCCTcatgtgtgagtgcgtgtgttgTGTGATATGTATACTGTAAAATTGTTTACTCTATACATATAGTTGGACAGTTTGGCAATATGCCAATGGTCTGTTTTCCTTCAATCTCAGGAAATTCTGAACCCAAAGAAATGTAATCTAGTTCTCTCGGTTAATGAGAGTGCGGCTTCATCAGTCTCTCCAAAACATCACATTCACGTTAACCTTTCTGTACACTAATGTCACTGTACCCCATCCACACCACTGAACAATACGTCACAAAGATGTATCGATTCAGGTTTCTCTATAAGAGGtgatttttaagattttttttaataaagttgaATAAACCACACTTAAATGGATTTTCTTTTACAAAGTGCAGCTTGGCCTGCTCAATAATGTTCATCCACTGGTCTCCTTTCCAGTCtcttaaatgtaaaactatCATTGCCTGTATAACTGGAACTTGAtggaattttaatatttaagtcGCCTTTAAAGGGGTTTGAAGGTATCGACTTGGCTGTGTATTTTGTAAACTCCCCTCCCctttaaaaccaaagaaaaagaaTCAAAATTTCTTCCATTTTCTCTTCCTTGTCACATAGCTTGTACTGTGAAACATGCAGGctaaacaatgttttctattagATAAGAACCACGAGAGGCCTACCTATTGTACAGTAAATCTCTGTACGCTGCAGTTAATTACAAGCACTAAACAATCATGAAACGGTAGGTGCGATGAAGTCTGGGGGTTAGAGATTTTCCTGTGTCGAGAGTCCAGGCCTCAGTGTGACGTCGCAGGAAAAGGCCCTCGCTCAAAGCACTTCAGGTTTCGTACTCTGTACTAACACAGGATTCAAGAAATTGAAGTGAGGCCTTGTAAACATCCGATAAATATTGTGTCTAGTCTCAAAAATCGTGAGGAGACAATGTTTGTTTAGCTTTAAATCTCTTGTAAACTACATATATACcaacaaatcataaaaaaaaaactttttaataCCTGGAATTGGGGAAGGAGCAGACCATAGGGGGCACACTTTCTCCAGAGCTCTACCCTAGAAATAGTtaggaattaaaatgtataaaagcgTCACTGCAAGGTGTAAACCATCCACCCCCACGCCAAGCCCATACCTGCTTTTAAGGCATGAACAAGCCAGGGTTTGACGTGTCAGGAAGACAGCAGTTCCCCCTAGTGTCTTGCAGTTTTTGCACTGAGCACTGAGCTCCTAAAGCTACATTTTCCCATCTTCACccttttaaatggtttattgaTCCACAACAATTAGACTAGCTTTCCTATGAAATTGATGCTTAACTAGTTGAAAGCCATTTAATAATATCTAGTGAATCGAATTCTTcccaagttaaaaaaataaagatatggAAGACCTTATTCTGGCCCCGGAGGAAGTTTTAAATTGgtcagtttgtttttgctgtaaaCAGCATGTGAAATAATGCTTTCGCAATTGCATACCCCTGTGTGGTGCCACTCTGttgtaatgaataaatacttGTGGTTGTATTTGAAGGGGCACAGACCCAAGTCTTCAACAGCAAACCAGCTACTTGCTCATTTTTAAGTTCATGTGTAAAGTTTTCTAGCATGGTCCCCATACAGCAGCAATGTCAAAGTGTGGGACCATCCTATTGGTATCCAAGGACAGCAAGACTGCATTAGTGTTTAGAATAGCATGATCCTCAATAGAACAGCTTCACTTCATAGCTGTCTGCCAGAGCCGTGCTGGGCAGTGACCTGTAGGTGCTGGTGAAGGCTCTCGGTCTCTCTCCCCATTTCTGAAGCCATAATCTGAGgggaaaaactaacaaaaaacgGAGGTTGTATATTTAGTGTGGGTTCTTTGTGCAAAACTAGTGTGCATTGTGTACTATCGAATCATGAAATAAACACCAGCTGG

Function

GO: NA

KEGG:

id description
K09575 FKBP9_10; FK506-binding protein 9/10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20819 lncRNA downstream 13054 35216103 ~ 35222538 (-) True G16761
TU20752 lncRNA downstream 116686 35116112 ~ 35118906 (-) True G16712
TU20726 lncRNA downstream 458544 34775825 ~ 34777048 (-) True G16693
TU20712 lncRNA downstream 478587 34754171 ~ 34757005 (-) True G16679
TU20700 lncRNA downstream 499043 34736339 ~ 34736549 (-) True G16669
TU20851 lncRNA upstream 24466 35270117 ~ 35270539 (-) True G16790
TU20865 lncRNA upstream 116472 35362123 ~ 35362326 (-) True G16804
TU20874 lncRNA upstream 150351 35396002 ~ 35398897 (-) False AMCG00016938
TU20925 lncRNA upstream 439052 35684703 ~ 35733304 (-) True G16858
TU20963 lncRNA upstream 597279 35842930 ~ 35912085 (-) True G16893
AMCG00016931 mRNA downstream 139090 35091453 ~ 35096502 (-) True AMCG00016931
AMCG00016911 mRNA downstream 972582 34214899 ~ 34263010 (-) True AMCG00016911
AMCG00016908 mRNA downstream 1226792 34000597 ~ 34008800 (-) True AMCG00016908
AMCG00016907 mRNA downstream 1354914 33877103 ~ 33880678 (-) True AMCG00016907
AMCG00016904 mRNA downstream 1639350 33582724 ~ 33596242 (-) True AMCG00016904
AMCG00016937 mRNA upstream 28272 35273923 ~ 35312713 (-) True AMCG00016937
AMCG00016938 mRNA upstream 150341 35395992 ~ 35399030 (-) True AMCG00016938
AMCG00016940 mRNA upstream 158979 35404630 ~ 35410252 (-) True AMCG00016940
AMCG00016939 mRNA upstream 165928 35411579 ~ 35420041 (-) True AMCG00016939
AMCG00016942 mRNA upstream 211546 35457197 ~ 35484896 (-) True AMCG00016942
TU20574 other downstream 1127651 34106690 ~ 34107941 (-) True G16563
TU20442 other downstream 1722013 33488725 ~ 33513579 (-) False AMCG00016891
TU20415 other downstream 1804507 33426488 ~ 33431085 (-) False AMCG00016889
TU20326 other downstream 2056709 33176076 ~ 33178883 (-) True G16356
TU20192 other downstream 2736697 32497507 ~ 32498895 (-) False AMCG00016859
TU21119 other upstream 2512506 37758157 ~ 37758471 (-) True G17032
TU21144 other upstream 2781832 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other upstream 2809014 38054665 ~ 38058939 (-) False AMCG00016959
TU21619 other upstream 5971000 41216651 ~ 41217231 (-) True G17421
TU22128 other upstream 7563060 42808711 ~ 42864616 (-) True G17842

Expression Profile