RNA id: TU20874


Basic Information

Item Value
RNA id TU20874
length 1757
lncRNA type sense_over
GC content 0.46
exon number 2
gene id AMCG00016938
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 35395992 ~ 35399030 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAACCCTCTTCAGCTGCgacctcctctcctcctctgctcctctctccctctctccgctcACTCCCTGCTCTCCGCATCTCTGGTCCACCGCAGCCCGTCACCGCCTGTCACCATGTTGGACATCTTGGTCTTGATGTTCTTTGCCATTATCGGGCTCGTCATCTTGTCCTATATTATTTACATGCTGTAAGCAGCGCCCGCGGATTGCGTCACTGCCAGGGGGACGCAATGGGTTTCTGCGGGCTTCGGAACCGCTGCGCATCAAAAGCACAAATGCCCCAGGACTGGCGGGGCTGGAGTCATGGACCGAACCCCGCATCGTAGATGAGTTTTCCGGTCCGGGGATggaggggtgtggggggtggagAGGGACGTGTCCACttcctccctctgtccctctctctgtgtgtctcatttTGGACAGGACACCATCACCTTGGGACCTTTGGCTCATTTCACCTCCACTTGGTGGAAAAGACGAGCACCTGAACTGCAAATGCCTCTTACTCTCTCTCCCCGACTAAGAGACTGCCCTGCCGGCTCCCCCAGCTCCTTCGACCTCCACAATATTAGCTGCCTCTCTTTCTTAATCCCTTGACTTTCCACACTGCACTTCACTGCATTCCTCACTCCCAGTCCCCCTCACTCTACTCTATAGTATTCCACCTGCTTCCACCTTTGTCCCTGGGTTTTCCCACACATGTTTTGCTCTCaaatttttcccttttctgcttCCTGGAACACACTGTCCCACTAGCCAACAACCCCTAAAGAGGCTatatattgctcttatattttgtaagtcaccctggacaagggcgtctgccaatacataaaaaataataaaaataataataataaaaatataggaCAGATCTCTGCTAATTATCTTCTTTAGGTGGTACTGCAGAACATCAGTGTATGCTAGCGTCACTTAGGTCAACAGCAGGACAGTTAGGCATGTTCGGTGAAATGCATTATCTGTACATTATCTGTTGATGTCCTCATTAGAGAACAGAAAGTTTAATTGTCTGTCACGGGATGGCCATGAAAAACGTCAGCTCGCCAGGTCAGTAGAAAACTGTGCAGAGAGACTGGACCGTTCCAAGTTGGGGGTGTTCATAAAAGTCATTTAAGTTGgacaaaaagacacattttcacTAAAGACATCATCCCTTGCCCAGATTACAATCAGAGAACTGGCGAGTGTGCACTGTGTGTGGGGACAGAGCTGATTAAGGAAAAGTTTAAAGTGATCATGTATCcaaaatgaaatagaaatacTGGGACTTAAACAGGTTATGTCTCTGTGCTGGAAACGTCATATAGCACTGCAATTGGATTGTTAGCCCTGTTTCTGTGTTGATGTTTTATGTTATAGTAAGCTATTGTCAGTGTTTTTGCTGCTGATTAGACAAGTGTAAAGGTGCCATTTGTGTCTGCTTTTCATTATAAGTCATCTGCTGGTGAAAAGGGACCATTTTTGAAGAATTTATCTGTACCACTCATCAGGAAGTACTACATTGGTTCATGTGCTGTAGCAGCTACTCAGAACTGGTAGATAAACACCAGTGAGCATGCACTCCAAGGAGGAGCAGACTTGTGTTGCTCAGAATAGTATTACTGTTGCGATTCCTGTGTTATTCCTTGCTCTTCCATTCTGGTCTGTAAGTCTTTAGCCTGTTTTTTCTGCACCTTTTCTGGGTTTGAGCTCAATCATTTCTGTAGCCGTGAAGCAGTTTAATAAAGATCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20865 lncRNA downstream 33676 35362123 ~ 35362326 (-) True G16804
TU20851 lncRNA downstream 125463 35270117 ~ 35270539 (-) True G16790
TU20819 lncRNA downstream 173464 35216103 ~ 35222538 (-) True G16761
TU20752 lncRNA downstream 277096 35116112 ~ 35118906 (-) True G16712
TU20726 lncRNA downstream 618954 34775825 ~ 34777048 (-) True G16693
TU20925 lncRNA upstream 285806 35684703 ~ 35733304 (-) True G16858
TU20963 lncRNA upstream 444033 35842930 ~ 35912085 (-) True G16893
TU21000 lncRNA upstream 953056 36351953 ~ 36352178 (-) True G16927
TU21058 lncRNA upstream 1310254 36709151 ~ 36709355 (-) True G16979
TU21065 lncRNA upstream 1774984 37173881 ~ 37174163 (-) True G16986
AMCG00016937 mRNA downstream 83289 35273923 ~ 35312713 (-) True AMCG00016937
AMCG00016936 mRNA downstream 150351 35235592 ~ 35245651 (-) True AMCG00016936
AMCG00016931 mRNA downstream 299500 35091453 ~ 35096502 (-) True AMCG00016931
AMCG00016911 mRNA downstream 1132992 34214899 ~ 34263010 (-) True AMCG00016911
AMCG00016908 mRNA downstream 1387202 34000597 ~ 34008800 (-) True AMCG00016908
AMCG00016940 mRNA upstream 5733 35404630 ~ 35410252 (-) True AMCG00016940
AMCG00016939 mRNA upstream 12682 35411579 ~ 35420041 (-) True AMCG00016939
AMCG00016942 mRNA upstream 58300 35457197 ~ 35484896 (-) True AMCG00016942
AMCG00016944 mRNA upstream 325636 35724533 ~ 35725033 (-) True AMCG00016944
AMCG00016952 mRNA upstream 853478 36252375 ~ 36279677 (-) True AMCG00016952
TU20574 other downstream 1288061 34106690 ~ 34107941 (-) True G16563
TU20442 other downstream 1882423 33488725 ~ 33513579 (-) False AMCG00016891
TU20415 other downstream 1964917 33426488 ~ 33431085 (-) False AMCG00016889
TU20326 other downstream 2217119 33176076 ~ 33178883 (-) True G16356
TU20192 other downstream 2897107 32497507 ~ 32498895 (-) False AMCG00016859
TU21119 other upstream 2359260 37758157 ~ 37758471 (-) True G17032
TU21144 other upstream 2628586 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other upstream 2655768 38054665 ~ 38058939 (-) False AMCG00016959
TU21619 other upstream 5817754 41216651 ~ 41217231 (-) True G17421
TU22128 other upstream 7409814 42808711 ~ 42864616 (-) True G17842

Expression Profile