RNA id: AMCG00016946



Basic Information


Item Value
RNA id AMCG00016946
length 1213
RNA type mRNA
GC content 0.49
exon number 14
gene id AMCG00016946
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 35803148 ~ 35848748 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GAATGGGGACTCCCAGCTATTTGACAAAGTTCGAGGTCTAGATATCAAGCTCCTCCGGTACCTTTCTGTGCGATACATCTGTGACTTGATGGTTGAGAACAAGAAAGTCAAGTTTGGTTTAAATGTAACGTCATCGGAAAAGGTGGACAAGGCTCAACGTTATGCAGACTTTACTCTCTTATCTGTGCCTTATCCAGGCTGTGAGTTTTTTAAGGACTATAAAGACAGAGACTATACAGCAGAGGGACTGGTCTTCAACTGGAACCAGGATTTTGTGGATGCTCCCCTCACTATCCCAGCATCCCTCAGCAAAAACTTGAATATCGACTGGAGTGAATAtcagTCATGGGACCTGGTGCAGCAGACACAAAATTATCTAAAACTGCTGATTCATATCATCAACAGTGATGATGAAAGTGGATTGTTAgATGGGGTCATTCATGCTAACTTAGAGCCAGCTGAAATTCTGTATTTGACTATTGCCTATGACTGGTTCCTCTTCGGacATATGCTCCCTGATCGACTGAGCAAAGGAGAAGAGattttctttttttgcttcaATTTTTTGAAGCACATCACCTCAGAAAAGTTCTCAGCTGTGAAGAAACAGAGAAGGAAAAACTCCCAGTTCAAAGACTCTGATTTTACAGTTGAGGATATCTGCCAACTTAAGAGGAGAGACCAGGGCAGTATCACTAGCCTCAGCAGCGACTTCTCTCTCATCACAGAGGACTCCCCAGCAGCAGCCTCCAGCTTTAACTATGAAGGAATAGAGTTAATCTCTGCAGGCTCTCAAGCTCAGGCAGCCTGGAGGAAAGGCAGGACGTCCTCTCCCCAGACAGTGTTTTGGAACAAGCCTTTCTCTGCAGAGGACAAATCTGCCGGAGAGTATGCGCGGTCCGGCTCCTCAGTTTCCACCGATTACGGCAGCTGGCAGATTGTGTCGGGCTGCGGCAGCATTCATGACCAAGGCGTCCTCACTGCTGAGTCTCCCCTCCCCTTCAGCTTTCAGGACGAGGGACCTAACGGCAGGATGTGTCTCCCTCCCCCAGAGAGACAGGCCcggcttgaggtggtgcgagagGTTTTTTTGGCGGCCTACAGCTCCACTGTGGGCCTGAAATCTGTCTCTCCCAGCCCCTCTGGAGCCATCTCGGGCCTCCTGGAACAGTTTGCACGTGGGGTGGGCCTTAGAGGAAGCAACGCCATCGTC

Function


GO: NA

KEGG:

id description
K18086 MTMR14; myotubularin-related protein 14

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU20876 lncRNA upstream 353977 35399828 ~ 35449171 (+) True G16814
TU20867 lncRNA upstream 421365 35381497 ~ 35381783 (+) True G16806
TU20848 lncRNA upstream 451228 35351577 ~ 35351920 (+) True G16788
TU20844 lncRNA upstream 496423 35306489 ~ 35306725 (+) True G16784
TU20839 lncRNA upstream 520388 35282171 ~ 35282760 (+) True G16779
TU20933 lncRNA downstream 49459 35898207 ~ 35898516 (+) True G16863
TU21047 lncRNA downstream 832591 36681339 ~ 36681552 (+) True G16969
TU21063 lncRNA downstream 1124316 36973064 ~ 36973283 (+) True G16984
TU21071 lncRNA downstream 1398680 37247428 ~ 37303443 (+) True G16990
TU21081 lncRNA downstream 1565366 37414114 ~ 37418490 (+) True G16998
AMCG00016945 mRNA upstream 17989 35775076 ~ 35785159 (+) True AMCG00016945
AMCG00016943 mRNA upstream 179498 35623350 ~ 35623650 (+) True AMCG00016943
AMCG00016941 mRNA upstream 247952 35553222 ~ 35555196 (+) True AMCG00016941
AMCG00016935 mRNA upstream 542668 35247507 ~ 35260480 (+) True AMCG00016935
AMCG00016933 mRNA upstream 570619 35220562 ~ 35232529 (+) True AMCG00016933
AMCG00016948 mRNA downstream 253618 36102366 ~ 36202202 (+) True AMCG00016948
AMCG00016947 mRNA downstream 392641 36241389 ~ 36252215 (+) True AMCG00016947
AMCG00016949 mRNA downstream 450624 36299372 ~ 36301893 (+) True AMCG00016949
AMCG00016950 mRNA downstream 652301 36501049 ~ 36524631 (+) True AMCG00016950
AMCG00016951 mRNA downstream 685188 36533936 ~ 36559981 (+) True AMCG00016951
TU20555 other upstream 1702285 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 1755428 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 2130528 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 2945708 32856361 ~ 32857440 (+) True G16289
TU20165 other upstream 3299892 32500796 ~ 32503256 (+) False AMCG00016854
TU21320 other downstream 2647303 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 6542549 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 8277466 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 8805904 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 13553971 49402719 ~ 49403634 (+) False AMCG00017173

Expression Profile