RNA id: AMCG00016952


Basic Information

Item Value
RNA id AMCG00016952
length 2280
RNA type mRNA
GC content 0.43
exon number 15
gene id AMCG00016952
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 36252375 ~ 36279677 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTCACACAAACTTGTATCATGTCATCCCCATCACTAGTTCCCTCCTCAACATCTCCAGAAATGATGTCATCAGGGAAGGTATCGGTGCCACAATCCACATCACGGCAGTCCACTAATCCCTCAGCAAAATCAAGATCTGAAACAAAGTCTATAGTATCAGttcaaGATGATGATGACCGAGCCAGCAAAAACCCCTTTAGGCTACCTCCAAATAGTGATATTTTCCTTCTAAGGGACAAGGAGAGAGAACGCCAGAAGCTGGAACGTGAACGGGAAAAGAATCTCAAGATCCATCAAAAGACCACCTATGCAGGCCAGATGAACAAGAAACGAGCAGAGTTAAGACGCAAgatgaaagagggagaggatgTTGGGACAGATGAGAGAAATGAAGAAGCAGCCATTCTGGCTCTCCGAGATGACCCATCATGGAAACTAGCCACGACAAAAGATCGCAACATAGAACGAGAAAGCATAAATGAATTCATCTGTaagaaaagagaaatgtttctgttgcagTACTCATTGGCAGTGAAGAGGGATGAGATCCGCAAGCTAGATGAAGGTGCCGCAGCGGAGGAGCGCAAACTGGAAAAGGCCGAGCAGTATCTGGAGGAAGACACGGCCATGTTTGATGAGTTCCTCAAAGAGAATGACAAAAATTCAGTGGAAgccattaaaatTGCAGAACAAGAAGCAAAGGTGAAACTGGAGAAAGTGTCGGAAATTAAAAAGATCTCAACCAAAATGGTTTCACTCAAAAGTGACATTTCAAAGCATGAGGAGATCCTGAAGGAATACATGATGTACAAGGAGTTCCTTATTAAACTTTCACCAAAGGAATGGAGGCAAAAGTttgaggagaaaaggaaaactcGAGCTGCACTGAAGGAAAAAGGAGAAAGAGTGTCAGACTCTGCAAAACGCACAGACAGCAGGTCCTCCAGTGGAGCCCAGCAAGCTGGAAAAGATGGAGTATTAGGCCGTGACTCCAGTGTCCCATCTAGACATAGTGGGAAAGCACCTTCAGCAAGCAGAAAGTGGAGCTCTATATCCCacaaagaggaggaagaaaCCTCATCAGAAGATGATGagGAGCCAGAGCTATTCTTCACAGAACCACAGCAGCTACTTGACATTCTGACAGAGCTTGAGGAGCAGAACCTCTCTCTCATCCAGAACTCCAGAGAGACTGAGGAAGCCCTGGAGGAGTTCAAACACACCATGAGCAACACCCACCAAAAGATGAATCAGGAGACGGAGATTCTGAAGCAACAGATAGATGTTCTGAAGGACACAAttgaccgagagagagagagggctgctGAGCTAGAACTTAAAGCCAGACTGTTTTCTTATGGACAATTCAAAGGAGAGGACCAGGATGATATGATGGAGAGGCTGGAGAAGAAGGTGGGGGAGGTTTATCGAACTTGTATTGGAGACAATGAGGCCAACCTCAGTGCTCTGCAGATGCTCACTTCCATCGAGAGTCGACTGGATGAGCTGTTTGAGAACATCGAGATGATCCCACGTGAGAAGGTGCAGCTTGCCGAAAAGGTCAAGGAGAAAGAACGGCGTCTCAGGCTTAGGGAAGAAAAAATCAAAGTACAGAAGCAGCATCAGGAGGAGAGACTAAGGAAAGCCTTGGAGAGAGCCCAAGCTGACATCAAGAAAGCTGCAGGAAAAAAGTTGATGTTTCGTTCACAACCGCCTGCATGCAAACCAAAGGAGAACAAGGATCAAGACATTacagacaaagagaaagaggAGCAGCTGTACTTTTTCACCTAGAGGACTGTTTAGGAGAACTTGCTCCTTATCTAGTTTAGCTCAGTTAAAGACTTTATTTATAAACTAACccagaaacattacaaatgttcAGAAAACTAATATATCCCCAAATTATTAAAGAGGCAGATCAAATGGGCAGTTCAATTGTGCAGTGCAATGCAGAATTATTAAAGAggtaaaacagcagcagcattcACTTTGAATGAGCTTAGCCTTTCAGAGGGCTCCATACCTTAAGTATACCTCAAGAAACAAGATGCAGATTATTTTCTAAACTTTGTTCTTAGAACTACCCCCTAATTTTGTGGTATTTGGTAAATGCAGTGTTGGTTTTGTCCCTATAATACATCAAATCCTAATATTGTAAAATCAATTATGTACATTAAATGATTTGTGGGGGCTAGttccaaagaaaatgtaattgattcaATAAAATTCATATGTTGTCCATGAAAATGTGTCTGAAATGTGTTGATCTGTAAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20963 lncRNA downstream 340290 35842930 ~ 35912085 (-) True G16893
TU20925 lncRNA downstream 519071 35684703 ~ 35733304 (-) True G16858
TU20874 lncRNA downstream 853478 35396002 ~ 35398897 (-) False AMCG00016938
TU20865 lncRNA downstream 890049 35362123 ~ 35362326 (-) True G16804
TU20851 lncRNA downstream 981836 35270117 ~ 35270539 (-) True G16790
TU21000 lncRNA upstream 72276 36351953 ~ 36352178 (-) True G16927
TU21058 lncRNA upstream 429474 36709151 ~ 36709355 (-) True G16979
TU21065 lncRNA upstream 894204 37173881 ~ 37174163 (-) True G16986
TU21067 lncRNA upstream 916085 37195762 ~ 37196078 (-) True G16988
TU21073 lncRNA upstream 962082 37241759 ~ 37337110 (-) False G16992
AMCG00016944 mRNA downstream 527342 35724533 ~ 35725033 (-) True AMCG00016944
AMCG00016942 mRNA downstream 767479 35457197 ~ 35484896 (-) True AMCG00016942
AMCG00016939 mRNA downstream 832334 35411579 ~ 35420041 (-) True AMCG00016939
AMCG00016940 mRNA downstream 842123 35404630 ~ 35410252 (-) True AMCG00016940
AMCG00016938 mRNA downstream 853345 35395992 ~ 35399030 (-) True AMCG00016938
AMCG00016953 mRNA upstream 286604 36566281 ~ 36570011 (-) True AMCG00016953
AMCG00016954 mRNA upstream 403073 36682750 ~ 36701982 (-) True AMCG00016954
AMCG00016955 mRNA upstream 1138750 37418427 ~ 37499161 (-) True AMCG00016955
AMCG00016957 mRNA upstream 1256196 37535873 ~ 37569505 (-) True AMCG00016957
AMCG00016956 mRNA upstream 1407338 37687015 ~ 37688235 (-) True AMCG00016956
TU20574 other downstream 2144434 34106690 ~ 34107941 (-) True G16563
TU20442 other downstream 2738796 33488725 ~ 33513579 (-) False AMCG00016891
TU20415 other downstream 2821290 33426488 ~ 33431085 (-) False AMCG00016889
TU20326 other downstream 3073492 33176076 ~ 33178883 (-) True G16356
TU20192 other downstream 3753480 32497507 ~ 32498895 (-) False AMCG00016859
TU21119 other upstream 1478480 37758157 ~ 37758471 (-) True G17032
TU21144 other upstream 1747806 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other upstream 1774988 38054665 ~ 38058939 (-) False AMCG00016959
TU21619 other upstream 4936974 41216651 ~ 41217231 (-) True G17421
TU22128 other upstream 6529034 42808711 ~ 42864616 (-) True G17842

Expression Profile