RNA id: AMCG00016955


Basic Information

Item Value
RNA id AMCG00016955
length 3414
RNA type mRNA
GC content 0.51
exon number 23
gene id AMCG00016955
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 37418427 ~ 37499161 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gATTGCCCACAGATCCTCCCTTCCACTCAGATATACATCCCCGTAGGTGTAGTGAAGCCCATCACCCTGGCAGCCAAGAATCTCCCCCAGCCGCAGTCAGGCCAGAGGAACTATGAATGCATCTTCCACATCCAGGGCACAGTTATCAGTGTCACAGCACTGCGTTTCAACAGCACCAGCATTCAGTGCCAGAAGACTTCGTATGTCTATGAAGGAAATGACATCAGCGATCTTCCTGTGGACCTCTCTGTGGTATGGAATGGAAACTTTGTCATTGACAACCCCCAAAACATTCAAGCTCACCTGTATAAGTGCACTGCCCTTCGAGAAAGCTGTGGCATGTGCCTTAAAGCAGATCCACGCTTCGAATGCGGCTGGTGTGTTCAGGAGAAGAAATGCTCCTTGCGGCAGCACTGCCCCATCCACGAAAGCAGTTGGATGCATGCCAGTGCCGGGAACAGCAGGTGCACCCATCCCAAAATCACTAAGCTCCTTCCAGAAACTGGACCCAGACAAGGTGGAACCCGGTTGACTATCATTGGTGAGAATCTGGGGCTGCAGTTCCGAGACATCCAATCAGGAGTGAGAGTGGGCAAAGTGGTGTGCTACCCCATTGAGGAAGAGTACATCAGCGCTGAACAaatTGTGTGCCAGATTTCTGACGCCACTGGCTATAGGGTTCAGGAGGCCAATGtggaagtgtgtgtgagagactgcAGCTTAGACTACAGAGCCATCTCCCCGAAGACATTCACCTTTGTTacacccTATTTTTCAAGAGTGAACCCACCCAGGGGTCCAGTCTCAGGAGGAACACGCATCACCATTGAGGGGAATCACCTCAATGCAGGCAGTGCAGTGTCGGTCAACATTGGCCTCCACCCCTGCAGATTTGAGAGGAGGAGTAccagagagattgtgtgtgtgacaccATCTGGACAGAATCCAGGGGGCACCCCAGTCATGGTGGACATTAACTGGGCCGAACTCAGAAACCCTGAAGTCAAGTTTAATTACACAGAGGACCCCACAATCTTGAAAATCGACCCTGAGTGGAGCATTGCCAGtggTGGAACACCATTGACTATCACAGGCATCAATTTAGCCACCATCAAAGAACCCAAGATACGGGCCAAGTATGGATCTGCGGAATCCTTCGATaaCTGCACTGTCCACAATGACTCGACGATGGTGTGCTTCGCTCCATCTGTGGCTGAATCTGAGAAAAGCTTCTCTGACAGTGGAGACCGACCTGACGAGATTGGCTTCATCATGGACAATGTCCAGTCTGTGCTCATCGTCAATGAAACAGTGTTTAGTTACTACCCTGACCCCGTCTTTGAGCCCCTGAGCACCTCAGGAATTTTGGAGCTCAAACCTAGCTCCCCCCTCATACTCAAGGGCCGGAACCTAATTCCTTCAGCTCCTGGAAACTCCAGACTGAACTACACCGTGTTCATTGGAGAAACCCCGTGTGTGCTCACCCTGTCAGAGACGCAGCTTCTGTGCGAGTGGCCCAATCTCACCGGCCAGCACAAAGTCACTATTAAAGTGGGAGGTTTCGAGTACTCTCCTGGGACCCTGCAGATCTACTCTGACAGCCTGCTGACGCTGCCCGCCATTATAGGTATCGGCGGAGGAGGAGGCCTGctcctcctcatcatcatcatcgtcctCATCGCCTACAAGCGCAAGTCCCGGGATGCTGACCGCACCCTCAAACGCCTGCAGCTGCAGATGGACAACCTGGAGTCACGGGTGGCCCTTGAATGCAAAGAAGCATTCGCGGAACTGCAGACCGATATTCATGAGCTGACCAATGACCTGGATGGGGCTGGGATTCCCTTCCTTGATTACCGCACATACGCCATGAGAGTGCAGGCCAATGTTGAGAAGGCACTGAACTTGTTTGGGCAGCTGTTAAACAAGAAGCACTTCCTGTTGACCTTCATTCGCACACTAGAGGCCCAGCGCAGCTTCTCTATGCGTGACCGGGGCAACGTGGCCTCGCTCATTATGACCGCCCTGCAGGGAGAGATGGAGTATGCCACCGGTGTCCTCAAGCAGCTACTCTCTGACCTGATAGAGAAAAACCTGGAGAGCAAAAACCACCCCAAACTGCTGCTCAGGAGGACTGAGTCTGTTGCTGAGAAAATGCTGACGAATTGGTTTACTTTCCTACTTTACAAATTCTTGAAGgAGTGTGCTGGAGAACCCTTGTTCATGCTGTACTGTGCCATTAAACAACAGATGGAGAAAGGACCTATAGACGCTATCACAGGAGAAGCTCGGTATTCGTTGAGTGAAGACAAGCTTATCCGCCAACAAATCGACTACAAAACTCTGACTCTGCACTGTGTGAATCCAGAGAATGAGAACTCGCCCGAGGTCACAGTGAAAGGACTGAACTGTGACACGGTCACCCAGGTGACTGATGGGTCAGTAATCGCACTGGTACCAAAACAGAATTCAGCCTACAACATCTCCAACTCCTCCACTTTCACCAAATCGCTCAGTAGATACGAGAGCATGCTCCGTACAGCCAGCAGCCCAGACAGCCTACGGTCCCGCACCCCCATGATCACCCCTGACCTGGAAAGTGGCACCAAGCTGTGGCACTTGGTTAAGAACCATGACCACTCAGACCAGCGTGAGGGTGACCGTGGCAGCAAGATGGTCTCCGAGATATACTTGACACGGCTACTTGCCACCAAGGGTACGTTACAGAAATTCGTCGATGACCTCTTCGAGACGATATTCAGCACTGCCCACCGTGGCAGTGCCCTTCCCCTCGCCATCAAGTACATGTTCGACTTCCTGGACGAGCAAGCGGACAAGCACCAGATCAGTGATTCAGATGTGCGGCACACCTGGAAGAGTAACTGCCTACCTCTGCGTTTCTGGGTAAACGTGATAAAGAACCCCCAGTTTGTCTTCGACATCCACAAGAACAGTATTACAGACGCCTGCCTGTCAGTGGTCGCTCAGACCTTCATGGACTCCTGTTCCACATCAGAGCACAAATTAGGCAAGGACTCGCCTTCCAACAAGCTGCTGTATGCTAAAGACATTCCAAACTACAAGAATTGGGTGGAAAGAGCCATGGCCATAATTGGAGTTGCcattctgtgtctgtctccagAAGACAGAGGCAATAGGGAGGGAAGGTACTACTCGGATATCTCCAGAATGCCAGCCATCAGTGACCAGGACATGAGCGCATATTTGGCTGAACAATCACGGCTCCATCTGAGTCAGTTCAACAGCATAAGTGCTCTCCACGAGATCTACTCCTACATTGTGAAGTACAAAGACGAGATATTGTCTGCTTTAGAAAAAGATGAACAAGCCAGAAGACAGAGACTGCGGTGTAAGCTGGAACAAGTCATCGACACCATGGCCCTTGCCAGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21108 lncRNA downstream 3617 37414114 ~ 37414810 (-) True G17021
TU21073 lncRNA downstream 81317 37241759 ~ 37337110 (-) False G16992
TU21075 lncRNA downstream 162636 37241759 ~ 37255791 (-) False G16992
TU21074 lncRNA downstream 169824 37241759 ~ 37248603 (-) True G16992
TU21067 lncRNA downstream 222349 37195762 ~ 37196078 (-) True G16988
TU21120 lncRNA upstream 316416 37815577 ~ 37816017 (-) True G17033
TU21126 lncRNA upstream 359163 37858324 ~ 37858524 (-) True G17039
TU21147 lncRNA upstream 376089 37875250 ~ 37968168 (-) True AMCG00016959
TU21193 lncRNA upstream 590518 38089679 ~ 38117255 (-) True G17094
TU21253 lncRNA upstream 826089 38325250 ~ 38326037 (-) True G17140
AMCG00016954 mRNA downstream 716445 36682750 ~ 36701982 (-) True AMCG00016954
AMCG00016953 mRNA downstream 848416 36566281 ~ 36570011 (-) True AMCG00016953
AMCG00016952 mRNA downstream 1138750 36252375 ~ 36279677 (-) True AMCG00016952
AMCG00016944 mRNA downstream 1693394 35724533 ~ 35725033 (-) True AMCG00016944
AMCG00016942 mRNA downstream 1933531 35457197 ~ 35484896 (-) True AMCG00016942
AMCG00016957 mRNA upstream 36712 37535873 ~ 37569505 (-) True AMCG00016957
AMCG00016956 mRNA upstream 187854 37687015 ~ 37688235 (-) True AMCG00016956
AMCG00016959 mRNA upstream 555512 38054673 ~ 38058800 (-) False AMCG00016959
AMCG00016958 mRNA upstream 562912 38062073 ~ 38071943 (-) True AMCG00016958
AMCG00016964 mRNA upstream 592888 38092049 ~ 38114746 (-) True AMCG00016964
TU20574 other downstream 3310486 34106690 ~ 34107941 (-) True G16563
TU20442 other downstream 3904848 33488725 ~ 33513579 (-) False AMCG00016891
TU20415 other downstream 3987342 33426488 ~ 33431085 (-) False AMCG00016889
TU20326 other downstream 4239544 33176076 ~ 33178883 (-) True G16356
TU20192 other downstream 4919532 32497507 ~ 32498895 (-) False AMCG00016859
TU21119 other upstream 258996 37758157 ~ 37758471 (-) True G17032
TU21144 other upstream 528322 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other upstream 555504 38054665 ~ 38058939 (-) False AMCG00016959
TU21619 other upstream 3717490 41216651 ~ 41217231 (-) True G17421
TU22128 other upstream 5309550 42808711 ~ 42864616 (-) True G17842

Expression Profile