RNA id: AMCG00016956



Basic Information


Item Value
RNA id AMCG00016956
length 1221
RNA type mRNA
GC content 0.53
exon number 1
gene id AMCG00016956
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 37687015 ~ 37688235 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAGGCCACTTTCCAGATGTCCTAGCCCCTCTCTGTATCTGTGGAGCCTTTTGATTTTGGGTGCCCTGGCCTCCACCATTGCTCGAGAGAGCCCTAAACCTTTCAAAACGTTTTCCCCAAAGGAAACTGGTCTGACGCACTTGGTGATACACAACAAAACGGGGGAAGTGTATCTGGGGGCCGTTAACTGGATTTACAAGCTCTCCAACAACCTCACCTTGTTGAGGAATCATATGACAGGCCCGGTTGAAGACAACGAGAAATGCTACCCACCTCCCAGCGTCCAGTCCTGCCCCCACGGTCTGGTCCACACCAACAACGTCAACAAGCTACTGCTGGTTGACTACACCCAGAACCGCCTCATTGCTTGTGGCAGTGCTTCTCAGGGGATCTGCCAGTTCTTGCGGCTGGATGACCTCTTCAAGCTTGGGGAGCCCCACCACCGCAAGGAGCATTACCTTTCCAGTGTCAACGAATCGGGAACCATGTCTGGTGTCATCATCGAGGGCCTCAATGGGCTGAACAACAAGCTCTTCATCGGCACACCCATTGATGGCAAATCGGAGTACTTCCCAACCCTCTCCAGCCGGAAGCTCATGGTCAACGAGGAGAATGCGGACATGTTCAGCTTTGTCTACCAGGATGAGTTTGTTTCCTCCCAGCTGAAGATCCCCTCTGACACCCTCTCCAAGTTCCCTGCATTTGACATCTACTACATCTATAGCTTCAGCAGTGAGCAGTTTGTGTATTACCTCACCCTGCAGCTGGACACACAGCTCACTTCCCCGGATGCCAGCAGTGAACAGTTCTTCACCTCCAAGATTGTGCGCCTTTGTGTCGATGACCCCAAATTCTACTCCTATGTGGAATTCCCCATTGGCTGCACCAAGGATGGCGTGGAGTACCGTCTCATTCAGGACGCTTTCCTCAGCAGGCCGGGCAAACATCTGGCCCGCTCGTTGGAAATCTCAGAGAAGGAGGACATCCTGTTCACGGTCTTCTCCCAGGGGCAGAAGAACCGGGCTAAGCCCCCCAAGGAGTCGGCCATGTGCCTCTTCACTCTGCGCAAGATCAAGGAGAAGATCAAAGAGAGGATTCAGTCCTGCTACAAGGGAGATGGGAAACTCTCCCTGCCCTGGCTGCTCAACAAGGAGCTGGCCTGTATCAACTCGGTAAGTGGACAAGCCTTATGTGTAGCTCTTGATTTTGTATTGGTATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21108 lncRNA downstream 272205 37414114 ~ 37414810 (-) True G17021
TU21073 lncRNA downstream 349905 37241759 ~ 37337110 (-) False G16992
TU21075 lncRNA downstream 431224 37241759 ~ 37255791 (-) False G16992
TU21074 lncRNA downstream 438412 37241759 ~ 37248603 (-) True G16992
TU21067 lncRNA downstream 490937 37195762 ~ 37196078 (-) True G16988
TU21120 lncRNA upstream 127342 37815577 ~ 37816017 (-) True G17033
TU21126 lncRNA upstream 170089 37858324 ~ 37858524 (-) True G17039
TU21147 lncRNA upstream 187015 37875250 ~ 37968168 (-) True AMCG00016959
TU21193 lncRNA upstream 401444 38089679 ~ 38117255 (-) True G17094
TU21253 lncRNA upstream 637015 38325250 ~ 38326037 (-) True G17140
AMCG00016957 mRNA downstream 117510 37535873 ~ 37569505 (-) True AMCG00016957
AMCG00016955 mRNA downstream 187854 37418427 ~ 37499161 (-) True AMCG00016955
AMCG00016954 mRNA downstream 985033 36682750 ~ 36701982 (-) True AMCG00016954
AMCG00016953 mRNA downstream 1117004 36566281 ~ 36570011 (-) True AMCG00016953
AMCG00016952 mRNA downstream 1407338 36252375 ~ 36279677 (-) True AMCG00016952
AMCG00016959 mRNA upstream 366438 38054673 ~ 38058800 (-) False AMCG00016959
AMCG00016958 mRNA upstream 373838 38062073 ~ 38071943 (-) True AMCG00016958
AMCG00016964 mRNA upstream 403814 38092049 ~ 38114746 (-) True AMCG00016964
AMCG00016963 mRNA upstream 453526 38141761 ~ 38146133 (-) True AMCG00016963
AMCG00016962 mRNA upstream 461270 38149505 ~ 38163660 (-) True AMCG00016962
TU20574 other downstream 3579074 34106690 ~ 34107941 (-) True G16563
TU20442 other downstream 4173436 33488725 ~ 33513579 (-) False AMCG00016891
TU20415 other downstream 4255930 33426488 ~ 33431085 (-) False AMCG00016889
TU20326 other downstream 4508132 33176076 ~ 33178883 (-) True G16356
TU20192 other downstream 5188120 32497507 ~ 32498895 (-) False AMCG00016859
TU21119 other upstream 69922 37758157 ~ 37758471 (-) True G17032
TU21144 other upstream 339248 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other upstream 366430 38054665 ~ 38058939 (-) False AMCG00016959
TU21619 other upstream 3528416 41216651 ~ 41217231 (-) True G17421
TU22128 other upstream 5120476 42808711 ~ 42864616 (-) True G17842

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_03277026_03283028.mRNA True 3112 mRNA 0.44 3 CI01000001 3275743 ~ 3283450 (-)