RNA id: AMCG00016958


Basic Information

Item Value
RNA id AMCG00016958
length 3678
RNA type mRNA
GC content 0.41
exon number 9
gene id AMCG00016958
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38062073 ~ 38071943 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATCTGACTGCTGCCCATGCGGTCTCTGAGTGGTGCCTTGTGTTTGCCTTCAGAGTGAGGTTCTGGGACCTGCTTCTGCTCATCCCCAATGTGGCGTTCTTCATATTCCTGCTCTGGAAGCTGCCGTCTGCCCGAGCCAAGATCCGCACTACCTCCAGTCCCATCTTCATTACCTTTTACATACTGGTGTTTGTTGTGGCAGCTGTTGGAATCACTCGAGCCATAGTCTCTATGACCGTTAGTGCTTCTAGTGCAGCCACCATCATTGACAAGGTTCTTTGGGAGATAACCCGATTCTTCCTGCTTGCCATTGAGCTCAGTGTCATCATACTAGGACTCGCCTTTGGTCACCTTGAAAGCAATTCGAGCATAAAGCGAGTTTTAGCCATCACTGCTGTTCTGGCATTGGGCTACTCTATCACACAGGGGACATTAGAGATCCTGTATCCAGATGTCCATCTCTCAGCCGAGGACTTCAACATCTATGGCCACGGAGGGCGTCACTTCTGGCTTGCCAGCTCCTGCTTTTTCTTCCTGaTTTATTCCACGATTGTCATCCTTCCAAAAACCCCACTGAAAGACAGAATCTCTCTTCcatCCAGGAAGAGTTTCTATGTGTATGCTGCCATCCTGTCCATGCTGAACCTGGTGCAAGGCCTGGGCAGTGCGTTACTGTGCGCCAGCATCATAGAGGGGCTTTGCTGTGTGGATGTCACAACATTCCtctatttttctgtgtttgccCCCCTGATATACGTGACATTCCTGAAAGGATTTTTTGGGTCGGAGCCCAAGATCCTGTTTTCCTACAAATCCCAGATTGACGAGCCCGATGAGACGGATGTGCACCTCCCCCCAACCTATGGTGTTGGCAAGAAAGATGCTCACGAAGGCGGGTCATACTCCAGCACACAGATCGACAGCTCGGGGGCCTACCTGGACGATGTGGCCTCGGGCCCTTACCCTGTAGGCAGCATCAACAGCATTGACAGTGACCGCTGGAGGGCCATTAACACCTAGAGCCCAGCACACAAGGAGCAGAGGGGAGATGGgccagggggtgggggtggaccTCTGCAAGGACAGTTTCAGTCATGGAATGTTAAAGGCCAGAATATTATACAGGATTTTATAAATCCATTCGTGAGGGGTGGGTCGGGCGGTGTATCCTTCCAGTTTTCTGATAAGTAGCTTGTGATTTGGTAACACCCGCTGTATTAAACTCAATCGTTCCTTAAAAGTCAAAAGGTCTGAAAAAACAGGCAGGCAAGGAAAGAAAAGCTAGCCATCGATTTTGAATGGTTTCGCCTCTTGGTTTTGTAGGCCATCGTTGGAAGAGCATGCCATTTACATTGTGTAGGAAGTGCTATGTTTGATGAAAGCTTTCTTTGAAGGTGTAGAGACACTTCCATCTAAAATGAGTTGGATGATGATCGAGTTGATCACAGAATGTCTTCGTTGGTGTATTCCATTATCAGTGTCCTCAAAGTTCTCTTGTGCAAAAGATAGTTGTGAGGTTTCCACAGCTCTGGCTTCTGCAAGGTGCTCTGGAGTGAAACTACAACATTAAGCGGAATTTCTCAAGCAAACTTTGCTTAATTAACCAATTACCATTCTCACCACTACTAGCCTGGTATTGAATATCACATTTTTAACAGAAGTGTTTGATCAGATTTTAATTgcgttttattttccttccctttGCAGCTATATTTCTTGGTAGTATAGTGATTTAGAAAAGAGATGCACAGTTCTAATTTTCTCAGTGGGGGCCCAGTATACAATAATCCCAAAGCAGAACCAAGTGTTCTGTTAGGGATTGTTTATGTAATTAAACCGTAATCTTTTTGAAAGtgttatacttaaaaaaaaaaaaaattcgaGTGGATGGCGATTTgaaattttatttatatttgtacacagtttttaatttgcacttgGTGGGAAAGGCCTGGGATATCGCTGCACAATAACTACCAATATGATCAACTGTAATCAGCCACATAATCAGACTCAAGAATTCCACACCAGTCATGTGCAACCTAAAGTGATACATAATGCGTAAAAGCACTTCATATGGTAGCTATTATAAAAAGATATAGCCATGGAGCCAAGGAGGACATCTGTCAAACAGTTAATCAGCTCTGTAATAGTTTCTGATCCAATTTGTGTTCTCTGCCATTAGCTGATTTACCCATGATCTGTATTACTATTCTACTTTTTTATGTGGGAAAAACCAGTACCAAGAATATATCAGTCATCTTTTATTTTCACCCAGTGTTCCTGCTTGCCTTGGTGAAAGTCTGTAGATGGAGTCAGTGCCTGTGATTGTTGCTAATTTAAGGAATATGTGGTGTAATTTGTACAAGTATgctttgtttaacattttcagaggAGGATATCGATATCTGTTGAGGATTGTGTGCTTGTTCAACTAGATCCCCAGAATTGCCTCCTCAGCCACTGTGATGCTTATGTGCGCTCCTAAAAAGAGTTCAGTATTAATTCTTCTGCCTACACAAACTACTGAAGCTTCATCCCAACAGCATCAAAATGGAACTGGTATCTGGAATAAGGTTGATCCcatttgaaacaataatataaatagtaataataataataataataaatataataaatataattaatttaatttacggAACAACAGCTGAAGGCTCGTGTGATTTGTATTTGATCAGTGTTCAGATCAGTGCTGTAGGTTGAATTCTATTGTAAAACACAAGATTTCAGATGCTTCTCATAGACCACAGTATAGTGCTACCAGATCGAATATGGAAAGAATAGCCACAGAATACATGATACTCACTTTGATTGTATTAtctatataaatctatatttgtttcaatgtaaAGCAATTGTTATATTGGCTTCCTAGGTTGTGAGCCCTTTCCCCTGACTTACAAACTCAGCCACTGTCGAAAATTTCAATCTACACAATGTGGAACTTGCCTTGTTAAATGCACAGTGGATATGAAAAGGCTTGCGGATTGGTAGCTTTGCATCTGCAGGgaagataaatgtattttgtgaactgtgaatcagatttttaaattattagtccaatttattttgttgatcgaaaagaccaaataaaaacgtTGCACTCAAATTTCAGTGTTTAACAGGACATGTTTGTAGTACATGCATTATAGGGGGGCACAAGTAAACAAAGTCTTAGCATGCATGCTTCATaatataaatgtctgtttattaGACAAAACCGTATAATTATTGGTTATTAAACCACCAAAAAGGTATTCAATGTGTGCTCTTCTTTACACCCAAGAAAAGTATCTCATTGAAGATGCCCtgtatacaattacaaaatcttCTCTAAGGGTCTGAAGCTTGTGTCGAGTTACTGAATTGTGTGATATGAATTTTGCACAGGCAGATGATTTTCATTGCGACGACTGGCTCTCTCCCATGGGTGAGAACTTGCAGCAGAAGAGAACAATGCAAGACCTGTTGCATTCAGGAGCAGAGACTTTAAAAGGACTGCTACAGATAACAGGCTGCCTTCATCGATGTCATCAGAAAcatggaaaacatttgaaatgtttgttttttccccccaataagatttttttaaattgtattgtatgtatttctgtagagtattaaaacaaaaaaagagattatatatatatatatata

Function

GO: NA

KEGG:

id description
K22988 TPRA1, GPR175; transmembrane protein adipocyte-associated 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21147 lncRNA downstream 93905 37875250 ~ 37968168 (-) True AMCG00016959
TU21126 lncRNA downstream 203549 37858324 ~ 37858524 (-) True G17039
TU21120 lncRNA downstream 246056 37815577 ~ 37816017 (-) True G17033
TU21108 lncRNA downstream 647263 37414114 ~ 37414810 (-) True G17021
TU21075 lncRNA downstream 806282 37241759 ~ 37255791 (-) False G16992
TU21193 lncRNA upstream 17736 38089679 ~ 38117255 (-) True G17094
TU21253 lncRNA upstream 253307 38325250 ~ 38326037 (-) True G17140
TU21261 lncRNA upstream 267632 38339575 ~ 38339875 (-) True G17148
TU21262 lncRNA upstream 268440 38340383 ~ 38340835 (-) True G17149
TU21281 lncRNA upstream 313878 38385821 ~ 38386161 (-) True G17164
AMCG00016959 mRNA downstream 3273 38054673 ~ 38058800 (-) False AMCG00016959
AMCG00016956 mRNA downstream 373838 37687015 ~ 37688235 (-) True AMCG00016956
AMCG00016957 mRNA downstream 492568 37535873 ~ 37569505 (-) True AMCG00016957
AMCG00016955 mRNA downstream 562912 37418427 ~ 37499161 (-) True AMCG00016955
AMCG00016954 mRNA downstream 1360091 36682750 ~ 36701982 (-) True AMCG00016954
AMCG00016964 mRNA upstream 20106 38092049 ~ 38114746 (-) True AMCG00016964
AMCG00016963 mRNA upstream 69818 38141761 ~ 38146133 (-) True AMCG00016963
AMCG00016962 mRNA upstream 77562 38149505 ~ 38163660 (-) True AMCG00016962
AMCG00016961 mRNA upstream 99209 38171152 ~ 38174324 (-) True AMCG00016961
AMCG00016967 mRNA upstream 110359 38182302 ~ 38219837 (-) True AMCG00016967
TU21144 other downstream 3134 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 3134 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 303602 37758157 ~ 37758471 (-) True G17032
TU20574 other downstream 3954132 34106690 ~ 34107941 (-) True G16563
TU20442 other downstream 4548494 33488725 ~ 33513579 (-) False AMCG00016891
TU21619 other upstream 3144708 41216651 ~ 41217231 (-) True G17421
TU22128 other upstream 4736768 42808711 ~ 42864616 (-) True G17842
TU23267 other upstream 10417184 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 13358912 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 13373644 51445587 ~ 51449786 (-) True G19335

Expression Profile