RNA id: AMCG00016963


Basic Information

Item Value
RNA id AMCG00016963
length 531
RNA type mRNA
GC content 0.50
exon number 6
gene id AMCG00016963
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38141761 ~ 38146133 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCAGTCTGACCAGGCAGCCCCTGACTCAGGATCTCAAGAGGTGAACCCTGTCTTCTTGCAGCAGCTGAGAGAGCTTGATATCCCAGAGGAAGCAGCTAAACAGGCTCTTCTACACACCAGGAATGTGTCAGCTGAAGAAGCAGCCATGTACTATTTCAACAAACTTGAAAATGAGGAGGAAGGAGATGAAGACCTGTTGTTTAAGATGGTGTTTGTTGTAAACATGGAGCTGTCCATGGGAGTGGGAAAGGTGGCTGCACAGGTGGGCCATGCTGCAGTTGGACTATACCAGGCACTACAGGAGAAGAACAGCTGGCGAGAGATGGCCTGGAAATGGGACCATGCTGGTGCCAAGAAGGTGGTTGTACAGGGAACAAATATGGCCCATCTTTTGGAGCTCCAGGCCCTGGCTATGAGCCTCAGTCTACCCACTTACCTGGTTGAACCTGGGTCCCGTACTGTCTTGGCGATTATCGGAGAGGAGGAAATGGTCAACAATGTAACTGGAAATCTGAAACTGCTCTGA

Function

GO: NA

KEGG:

id description
K04794 PTH2; peptidyl-tRNA hydrolase, PTH2 family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21193 lncRNA downstream 24506 38089679 ~ 38117255 (-) True G17094
TU21147 lncRNA downstream 173593 37875250 ~ 37968168 (-) True AMCG00016959
TU21126 lncRNA downstream 283237 37858324 ~ 37858524 (-) True G17039
TU21120 lncRNA downstream 325744 37815577 ~ 37816017 (-) True G17033
TU21108 lncRNA downstream 726951 37414114 ~ 37414810 (-) True G17021
TU21253 lncRNA upstream 179117 38325250 ~ 38326037 (-) True G17140
TU21261 lncRNA upstream 193442 38339575 ~ 38339875 (-) True G17148
TU21262 lncRNA upstream 194250 38340383 ~ 38340835 (-) True G17149
TU21281 lncRNA upstream 239688 38385821 ~ 38386161 (-) True G17164
TU21283 lncRNA upstream 245537 38391670 ~ 38392072 (-) True G17166
AMCG00016964 mRNA downstream 27015 38092049 ~ 38114746 (-) True AMCG00016964
AMCG00016958 mRNA downstream 69818 38062073 ~ 38071943 (-) True AMCG00016958
AMCG00016959 mRNA downstream 82961 38054673 ~ 38058800 (-) False AMCG00016959
AMCG00016956 mRNA downstream 453526 37687015 ~ 37688235 (-) True AMCG00016956
AMCG00016957 mRNA downstream 572256 37535873 ~ 37569505 (-) True AMCG00016957
AMCG00016962 mRNA upstream 3372 38149505 ~ 38163660 (-) True AMCG00016962
AMCG00016961 mRNA upstream 25019 38171152 ~ 38174324 (-) True AMCG00016961
AMCG00016967 mRNA upstream 36169 38182302 ~ 38219837 (-) True AMCG00016967
AMCG00016968 mRNA upstream 214401 38360534 ~ 38371250 (-) True AMCG00016968
AMCG00016969 mRNA upstream 360023 38506156 ~ 38513767 (-) True AMCG00016969
TU21144 other downstream 82822 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 82822 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 383290 37758157 ~ 37758471 (-) True G17032
TU20574 other downstream 4033820 34106690 ~ 34107941 (-) True G16563
TU20442 other downstream 4628182 33488725 ~ 33513579 (-) False AMCG00016891
TU21619 other upstream 3070518 41216651 ~ 41217231 (-) True G17421
TU22128 other upstream 4662578 42808711 ~ 42864616 (-) True G17842
TU23267 other upstream 10342994 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 13284722 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 13299454 51445587 ~ 51449786 (-) True G19335

Expression Profile