RNA id: AMCG00016971


Basic Information

Item Value
RNA id AMCG00016971
length 1429
RNA type mRNA
GC content 0.40
exon number 4
gene id AMCG00016971
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38513220 ~ 38524777 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAATCAGCACATGCAATTCATCGCACATTTCCTTTGGTTTGCAGCAGGTAGGAGGGGAGGTACTTCAGCTCTCAGTAAAATCACAGATTGTTCTGGAAATTAAACCGTTCAAGCCTGTGGAACAAGTATACAAAGCTTTGTCGTGTCACCCAGCAGATTCCCAACACATCCAGCTTCCAGAAAGTTATCCTTTTGAAAAACAACTTGTATGCACTTCACTGCAGCTGGTAAATGTTACATAATATCCAGCCGCAGTAAAGACGACACCGCACTGTTCTACAATCAATGATAATGACACCAGCAGAGACGCAAACGCCGCACAAAACGGCAAGGCGTATCATCATGcaacagacGTCCAACACTGTGGAGGAGCCGCTGGACCTCATCAGACTGAGCCTGGACGAGCGGATCTATGTGAAGATGCGCAATGACAGGGAGCTGCGGGGCCGGCTGCATGCTTATGATCAGCATTTGAACATGATATTGGGGGATGTGGAAGAGACCGTGACCACAGTGGAGATTGATGAGGAAACTTATGAGGAAATCTATAAaTCCACAAAGAGGAACATCCCAATGCTGTTCGTTCGGGGAGATGGAGTAGTATTGGTTGCTCCTCCACTGAGAGTTGGCTAGACCTACAAGCACTAGAAGAGAACACACTTGAGACTCCACATTATACACACGTTTTTATTTGGACTTACTTCCCCAGCGGAAACAtggatcttttatttttttctcagctTTGGACAAAACACAGATGAAGATGGAAGTGGAGACACTTTTCTTTTATCTCCTCAGGTTCAATGTAAAATACCTTAGTTTTTTGCTAGAATAAGAATTTgagtttgtggttttattttattttttgtattttagagcTAACTAGATAGAACGGTAGTTTttcctcatgttttttttttggtcagatGGAAATGAACTAATTTGTGTGCAAATGGTTTGGAAAATAATGCTTATAAACATTTCTGTTCCATTCACCTTGGTGTCCTTATGCTTTAATTTCCTATCATGATGTTATTGTAAAACTTGGAAAAAATGTGCTATGGCTTATTTGAAATggatttaagttatttttttatttatttaatttagtatagGTTGTTTCAGGAGTATAATAATGAGTTAACATGATCTTTCCTATACTGAGATGCTTCTACAGTAGGTCAAGTGCTGGAGAGTCATAAACTAAGAGTCTCTCGGCAATGCGTTGTCTGGACACCAAATAATCGGCCCCTCCAAAACCATCTGAAGAGGAACAAATATTAAAGGCAGTATCTTTCGATAGTCTTCAATATGTTGCTTTCAAAATTAAGATGCAAGCACTGGCTGTGACAGTAAATAAATGGTTTGAGATCTTATTAATAGTCATAGGGCAATGGCTTGTCTAAGGCTAGTTACAGAGTCTGtg

Function

GO: NA

KEGG:

id description
K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21282 lncRNA upstream 121148 38391677 ~ 38392072 (+) True G17165
TU21183 lncRNA upstream 377380 38135173 ~ 38135840 (+) True G17089
TU21167 lncRNA upstream 395965 38089801 ~ 38117255 (+) True G17073
TU21157 lncRNA upstream 420541 38062034 ~ 38092679 (+) True G17064
TU21131 lncRNA upstream 526563 37948232 ~ 37986657 (+) True G17044
TU21343 lncRNA downstream 11284 38536061 ~ 38536333 (+) True G17214
TU21350 lncRNA downstream 100749 38625526 ~ 38626023 (+) True G17221
TU21363 lncRNA downstream 229744 38754521 ~ 38805946 (+) True G17230
TU21428 lncRNA downstream 554638 39079415 ~ 39079897 (+) True G17274
TU21437 lncRNA downstream 726723 39251500 ~ 39254490 (+) False AMCG00016979
AMCG00016973 mRNA upstream 21176 38479332 ~ 38492044 (+) True AMCG00016973
AMCG00016974 mRNA upstream 41329 38468150 ~ 38471891 (+) True AMCG00016974
AMCG00016975 mRNA upstream 58556 38448608 ~ 38454664 (+) True AMCG00016975
AMCG00016972 mRNA upstream 98016 38400730 ~ 38415204 (+) True AMCG00016972
AMCG00016970 mRNA upstream 113933 38395699 ~ 38399287 (+) True AMCG00016970
AMCG00016976 mRNA downstream 261573 38786350 ~ 38800821 (+) True AMCG00016976
AMCG00016979 mRNA downstream 714296 39239073 ~ 39251721 (+) True AMCG00016979
AMCG00016981 mRNA downstream 746496 39271273 ~ 39294718 (+) True AMCG00016981
AMCG00016980 mRNA downstream 780503 39305280 ~ 39323121 (+) True AMCG00016980
AMCG00016983 mRNA downstream 850483 39375260 ~ 39396596 (+) True AMCG00016983
TU21320 other upstream 9588 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 4412357 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 4465500 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 4840600 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 5655780 32856361 ~ 32857440 (+) True G16289
TU21955 other downstream 3866520 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 5601437 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 6129875 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 10877942 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 11188747 49713524 ~ 49721471 (+) False AMCG00017183

Expression Profile