RNA id: AMCG00016973


Basic Information

Item Value
RNA id AMCG00016973
length 2188
RNA type mRNA
GC content 0.48
exon number 11
gene id AMCG00016973
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38479332 ~ 38492044 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTAGTCGGAAATCCCACAATCAGCTGGTTGCAGAGACGATCCGAGATCCACGAAAATAACGCCAGACGTTTTGCTTATACAGTGCAGAAATAACGGGCTGCATTCATTCCCGATTAACAGGGCGCTGGCCGGTTCAATGCATTTCAGGGGACTGAAATCTCTCTGGAGATGGACACAAATGATTTGTTTACAAGCTGCAGAAAGGGCGACATTTCTAGAGTGAGGTACCTTGTTGAACAAAGAGATGTGGAACTAAATGTAAGAGATAAATGGGACAGTACCCCATTTCCCATGTTTGGGTCTGGGGCACAGCTACACAAGCTACACTGTCTGTGCTCCATGAGGGATATGAGTAGGGCAAAGTGCGAGGCCAACACGTTTGATGGAGAGCGCTGTTTGTACGGAGCCCTGAGCGACACCATTCGGAGATTACTCAAGGAGTACAAGCGCATCACTGCTAAGGGCATGCAGAGGGATTACTATGATGACTTCCTGCAGAGgCTGCTGGAGCAGGGTTACTACAGTGACATAGTGTTCATCGTACATGGTGAATCCTTCAGTGCACATCGCAGCATCCTCAGTGCACGCTCAGAGTACTTCACTGAGATGTTCGAGACCAAATGGAAAGGGAAAAACATAATCGCCCTTAAGCACCCGCTGATCAATCCTGCAGCTTTTGGTTCCCTCTTGCAATACTTCTACACTGGGCGGTTGGATATTGATGTGGGCTATGTGGAGGACTGTAAGAGATTAGCCAAgcagtgcaaaataaatgaccTCATAGAGGAGCTGGAGAACAAGTGCAAACAAGTGTATGAATTTGTGTCTTCTAAGCCGGGTACCTGTGTAAAAGTCCTGACACTGGAACCCCAGAATAACCTTCAGTTGCAGGAGGATCTGGCTATACTAGCAGACTGCGCCTTACCTCCTGAGCTCAGGGTGTTTTTCTGTGGCCGAAGCGATTATTTCAAGGCCCTGTTGGAAGATCACTTCAGCGAGAGCGAAGTTCTGCAGTCTCAACCCACCACCCCTGTGCTCACCCTGCACAACATCTCTGAAGACATCTTCAGCAGAGTGCTCTACTACATTTACAGCGATGACACGGAGCTGTCTCCAGAAAATGTGTACGATGTGCTGTGCGTAGCTGACATGTACCTGCTGCCAGGGCTGAAGAGACTGTGTGGCAAAACCCTGGCCCTGACCCTCAGTGAGGAGAACGTCCTCAACATCTGGAAGACTGCCAAGCTCTTCCGTCTTTCCCGCCTGGAGGACCAGTGCACTGAGTACATGGCCAAGATCATTGAGAAGCTAGTGGAATTGGAGGAGTTTGCAGAGTTGATTAAGGAGGATGCCAGTGCAGTGGAAGCCAGGCAGGAAACGGACTCCATCCCCCTGGTTGACGAAATCCGGTTCCACATCACCAGCAATGTCCAGACCTACAGTGCCATTGAGGAGGCCAACCAGAGACTGGGAgtgctggaggagctgctggtGAGCATTGGGCTGGAATGCTAGAGACTAGGGGCTTCAGAGTTCCCCTGACCCAAAAATGTGTTCCACTGGGACGCAACTCCCAGCCGACTGTGCAAGATGGTCCGCCCCttcactccacactgctgctgatCATCTTTTTACCTCTCTCAAGACAGATGCCTCTCTACCCTTGTCAGTCACTTGTCATTTCTCGCTCACTAAGCATGAGGATAACAAACATTATTTGGTTACAGATCCCCtttcagctgctgcaggagTTGAAATTCAGTCCATTCTAATGTCAGTCAAAGGTCATGGGTCAATTCCCCCATGGAAATGAAAGCATTAACACCATAATGTGTGTTTCATATCTCTGCATATGATTTAATAGTCCCCTGTCTCTGATCTGATCAAATTCAGATGTCCTATTTTGAGCAAAGTTCCATTCCGTTCAGTTGGCAGTGACTAAATAAAGAATTATAGGAAACCAAGCTTCAAAGTCACAGCCTGCCTGTGCAATTCACTAGTCTGCGTAATGTGTTCTGCAACAATGTATCCACGATCTCCCATTagaaagttatttaattttaacccaCGATGGCTCATTCCTACAAAAGGCATGCAGAGATTATGAACTTCCCAATATTGCAGCTTGCAGttcatatgcatttttttttgttttgctctttttgcctgtgggggggggggggggg

Function

GO: NA

KEGG:

id description
K10520 ABTB1, BPOZ; ankyrin repeat and BTB/POZ domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21282 lncRNA upstream 87260 38391677 ~ 38392072 (+) True G17165
TU21183 lncRNA upstream 343492 38135173 ~ 38135840 (+) True G17089
TU21167 lncRNA upstream 362077 38089801 ~ 38117255 (+) True G17073
TU21157 lncRNA upstream 386653 38062034 ~ 38092679 (+) True G17064
TU21131 lncRNA upstream 492675 37948232 ~ 37986657 (+) True G17044
TU21343 lncRNA downstream 44017 38536061 ~ 38536333 (+) True G17214
TU21350 lncRNA downstream 133482 38625526 ~ 38626023 (+) True G17221
TU21363 lncRNA downstream 262477 38754521 ~ 38805946 (+) True G17230
TU21428 lncRNA downstream 587371 39079415 ~ 39079897 (+) True G17274
TU21437 lncRNA downstream 759456 39251500 ~ 39254490 (+) False AMCG00016979
AMCG00016974 mRNA upstream 7441 38468150 ~ 38471891 (+) True AMCG00016974
AMCG00016975 mRNA upstream 24668 38448608 ~ 38454664 (+) True AMCG00016975
AMCG00016972 mRNA upstream 64128 38400730 ~ 38415204 (+) True AMCG00016972
AMCG00016970 mRNA upstream 80045 38395699 ~ 38399287 (+) True AMCG00016970
AMCG00016965 mRNA upstream 127869 38337645 ~ 38351463 (+) True AMCG00016965
AMCG00016971 mRNA downstream 21176 38513220 ~ 38524777 (+) True AMCG00016971
AMCG00016976 mRNA downstream 294306 38786350 ~ 38800821 (+) True AMCG00016976
AMCG00016979 mRNA downstream 747029 39239073 ~ 39251721 (+) True AMCG00016979
AMCG00016981 mRNA downstream 779229 39271273 ~ 39294718 (+) True AMCG00016981
AMCG00016980 mRNA downstream 813236 39305280 ~ 39323121 (+) True AMCG00016980
TU20555 other upstream 4378469 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 4431612 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 4806712 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 5621892 32856361 ~ 32857440 (+) True G16289
TU20165 other upstream 5976076 32500796 ~ 32503256 (+) False AMCG00016854
TU21320 other downstream 4007 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 3899253 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 5634170 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 6162608 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 10910675 49402719 ~ 49403634 (+) False AMCG00017173

Expression Profile