RNA id: AMCG00016974



Basic Information


Item Value
RNA id AMCG00016974
length 606
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00016974
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38468150 ~ 38471891 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GACACGTTCCGTGTGGAGAGTGGGGACAGGCTGCTGGAGATGCTCGAGAGTGCTTTCTCCAGGAAGATGAACAGTCCTCAAGGCTCCTGGCTCATTTCACTGAGTAAACCTGACTGGCAGGACAAGCAGCTTCTCATGACTCTAGCCAGTGAACAAGGGTTCATTCCTACAAAAGATGTGCTGTCTATGCTGGGCGAAATCAGAAGAAGCTTATatgagATTGGCATCCAGAACTACACAAGTGTATCCGGCTGCCTGTCCAGGCCCAGTCAGACCCGCAGTGACTACGGGAAGCTGTTCGTAGTGCTGGTCATCATTGGGTCGGTCTGTGTGGTCATCATTGTGTCTGGCCTCATCTATATCTGTTGGCAGAAGCGCCTTCCAAAGATGAAAAACATGTCCAACGGTGAGGAGCTCCATTTTGTGGAGAATGGTTGCCACGACAACCCCACTCTCGACGTCACGAGTGACAGCCAATCAGAGATGCAGGAAAAGAAGGCCAGCATGAACGGGGTTGGCATGGAGGGCGGGGGAAACTGGCAAGTCTTGGTTAACAAGTCTGCCAAAGAGGAGGCAGAGAACATGGAGGAAGATACCCATCTTTAA

Function


GO: NA

KEGG:

id description
K06818 PODXL2; podocalyxin-like 2

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21282 lncRNA upstream 76078 38391677 ~ 38392072 (+) True G17165
TU21183 lncRNA upstream 332310 38135173 ~ 38135840 (+) True G17089
TU21167 lncRNA upstream 350895 38089801 ~ 38117255 (+) True G17073
TU21157 lncRNA upstream 375471 38062034 ~ 38092679 (+) True G17064
TU21131 lncRNA upstream 481493 37948232 ~ 37986657 (+) True G17044
TU21343 lncRNA downstream 64170 38536061 ~ 38536333 (+) True G17214
TU21350 lncRNA downstream 153635 38625526 ~ 38626023 (+) True G17221
TU21363 lncRNA downstream 282630 38754521 ~ 38805946 (+) True G17230
TU21428 lncRNA downstream 607524 39079415 ~ 39079897 (+) True G17274
TU21437 lncRNA downstream 779609 39251500 ~ 39254490 (+) False AMCG00016979
AMCG00016975 mRNA upstream 13486 38448608 ~ 38454664 (+) True AMCG00016975
AMCG00016972 mRNA upstream 52946 38400730 ~ 38415204 (+) True AMCG00016972
AMCG00016970 mRNA upstream 68863 38395699 ~ 38399287 (+) True AMCG00016970
AMCG00016965 mRNA upstream 116687 38337645 ~ 38351463 (+) True AMCG00016965
AMCG00016966 mRNA upstream 131504 38321965 ~ 38336646 (+) True AMCG00016966
AMCG00016973 mRNA downstream 7441 38479332 ~ 38492044 (+) True AMCG00016973
AMCG00016971 mRNA downstream 41329 38513220 ~ 38524777 (+) True AMCG00016971
AMCG00016976 mRNA downstream 314459 38786350 ~ 38800821 (+) True AMCG00016976
AMCG00016979 mRNA downstream 767182 39239073 ~ 39251721 (+) True AMCG00016979
AMCG00016981 mRNA downstream 799382 39271273 ~ 39294718 (+) True AMCG00016981
TU20555 other upstream 4367287 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 4420430 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 4795530 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 5610710 32856361 ~ 32857440 (+) True G16289
TU20165 other upstream 5964894 32500796 ~ 32503256 (+) False AMCG00016854
TU21320 other downstream 24160 38496051 ~ 38503632 (+) True G17193
TU21955 other downstream 3919406 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 5654323 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 6182761 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 10930828 49402719 ~ 49403634 (+) False AMCG00017173

Expression Profile