RNA id: TU21437


Basic Information

Item Value
RNA id TU21437
length 1650
lncRNA type sense_over
GC content 0.40
exon number 3
gene id AMCG00016979
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 39239073 ~ 39254490 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAACCATTACAATAAATGAAAGGGGCTAGTGATTtgagtttttacatttttattcaacaGACAGTTCAAAGTGCACACCAGAAGCCCAGTTTACTCATTCTCTTCACTGCGCAGTCTGGCATTGGGATTGGTAATCTTGATGGCAAGCTGTGCTGCTCTCTCCACAATGATCTTCCTGTTCTTGGAAGAGACATTGTGGGCGATTTCTGCACAGTGGGTCCTATGCTCATCATGAGAACTTCCAGCTCCTTGATGTTGTGGACTAAGAACTTCCTGAACCCAGATGGCAGCATGTGTTTTGTCTTCTTGTTGCTACCATAACCGATGTTTGGCATCAGAATCTGGCCCTTGAATCGCCTGCGGACTCTGTTGTCAATACCCCTGGGTTTACGCcagttttCTTAATCTTGACATAGCGATCTGACTGATGGCGGATGAACTTCTTTGTCCGCTTCTTGACGATCCTAGGCTTGATTAATGGTCTTAGGGCTGGCATGGTGCCTGCAACATGAAATCTTGTATCAATAGAGTTCCTGAGACTAATCAGCCACTGAAGGCCTGAAACTCAATTCCTAGCCAGCACATGCTGTCGTCGCCGTGATGTCATCAGGAAGGGACAAACACGCATACGTTACAGCTCAACCAAATATCCCATGTGAGTGTGATgggatgtaaaaaaataaataaataaaaatctccaTTATAACTCTGTAAGACCAGTTTCATTTAGAACAAAGTATATTCAGGATATTAGTTAAGTAAAAACAAAGCACTCTCAATTGAACACAGCTGTCGGGACTATATCGGGTGAACGATTAGCAACACATCCACATTTGCAgtatacatttgcttttaaatatatattcatatttgcaACACGTGgcatactgtaaaataaaacaagacaggGAAACAGCGGAGAGCCGGTATACACATGCAGCAGATAAATCCCGTCACCGAACTGCGCTACGTTGAGCAGGCCTAAATCAAAGAaaattactacatttaaaataatgcatacatgtcatgcattgtatttttccctAAAGAATCTACTAGACTcaagaagacattttaaaccacGCAAAATGAACCATTACATGGAAGTGACGCGGACAGGGCCGACGGGGTTCTCCATTAATCACCCATTCTAAATCAATATTAAAGATTGAATTGTGGCAAAAATACACTCCAATATTGGCACAAcataatgtttacaaaatatacaagtGCACTCGATGATGaataaatgcttaatttcaAGGATGATTGTCGATTTGTTTAACTCACCGTCAGTGTGACTGCCTTCCCTGAAGACagcacagaggaagagagagaagctaGAGGATGCCGGGAAATAAGGCAGCGCGCAAGGGAACTACAGCACGAACCGGAAGTGGCATTTTTACAACAAAATTTAAATACCTTCTTAGTGTAATCTAAATCTTAATACCGATTAGCATGCTATATTGTACagatattataatatttttgcGATGATAGTTATGTCCCCCTTAATggtatgtttttcataattagTTACCTTCCAGGACCTGGTCTAAGTTATAACCATGCTGCTTCATACTGTACCTAACATgagaaacacagcaacacacttGAGCATTTTGTGTTATCTTTAAATTGGAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21428 lncRNA upstream 171603 39079415 ~ 39079897 (+) True G17274
TU21363 lncRNA upstream 445554 38754521 ~ 38805946 (+) True G17230
TU21350 lncRNA upstream 625477 38625526 ~ 38626023 (+) True G17221
TU21343 lncRNA upstream 715167 38536061 ~ 38536333 (+) True G17214
TU21282 lncRNA upstream 859428 38391677 ~ 38392072 (+) True G17165
TU21543 lncRNA downstream 535599 39790089 ~ 39790567 (+) True G17361
TU21569 lncRNA downstream 1013935 40268425 ~ 40284772 (+) False G17381
TU21571 lncRNA downstream 1013935 40268425 ~ 40284772 (+) True G17381
TU21617 lncRNA downstream 1962005 41216495 ~ 41216809 (+) True G17419
TU21622 lncRNA downstream 1990812 41245302 ~ 41245519 (+) True G17424
AMCG00016976 mRNA upstream 450679 38786350 ~ 38800821 (+) True AMCG00016976
AMCG00016971 mRNA upstream 726723 38513220 ~ 38524777 (+) True AMCG00016971
AMCG00016973 mRNA upstream 759456 38479332 ~ 38492044 (+) True AMCG00016973
AMCG00016974 mRNA upstream 779609 38468150 ~ 38471891 (+) True AMCG00016974
AMCG00016975 mRNA upstream 796836 38448608 ~ 38454664 (+) True AMCG00016975
AMCG00016981 mRNA downstream 16783 39271273 ~ 39294718 (+) True AMCG00016981
AMCG00016980 mRNA downstream 50790 39305280 ~ 39323121 (+) True AMCG00016980
AMCG00016983 mRNA downstream 120770 39375260 ~ 39396596 (+) True AMCG00016983
AMCG00016982 mRNA downstream 145267 39399757 ~ 39429289 (+) True AMCG00016982
AMCG00016984 mRNA downstream 414710 39669200 ~ 39788816 (+) True AMCG00016984
TU21320 other upstream 747868 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 5150637 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 5203780 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 5578880 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 6394060 32856361 ~ 32857440 (+) True G16289
TU21955 other downstream 3136807 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 4871724 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 5400162 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 10148229 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 10459034 49713524 ~ 49721471 (+) False AMCG00017183

Expression Profile