RNA id: AMCG00016980


Basic Information

Item Value
RNA id AMCG00016980
length 2622
RNA type mRNA
GC content 0.40
exon number 11
gene id AMCG00016980
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 39305280 ~ 39323121 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACACAGGTTGCATTTGCCTCGGGTATCTATGCCACAGCGCACCGTCCCGCTCTCTGCTGACCGGGAAGTGTCCGCACACGGGGAGGAGCAGGACGCACAGCAGGGCCTAAGAGGGCGGGATCCTGGCGTGCTGCTTCAATAACTGCTTTCTTTTTCGGCTTACACATGGACAGCAAAGACGAAGAGTTTGGTGAGTTTGATCCAGATATTCTGGATGAAGGCCCCACAGCGCCCCCACCCGGCTTGTTTGATGATGTGTCCGGTTACGAGGAGACTCCCAAAAATGGAGACGACATAGACAAGTTGTACCCGCCTCCTCCTGACCGTGTTCCCATACCAGAACATGACCGGAATGCTGCTGTTCCTCATGTGAGGGTGCCCACAGTGTCTGAAGAAATCGCGAGAGAAGCTCTTCTCCAGTTTGTGGACAAGAAATGGACCTACAGGAGCAAACCGGCCAGGGATCTGGTTTTTAAGGATCTAAAACCCTTCACAGTGTACCGGtATCGCTTGGAAACATTTGCAGAATCCAGAGCCAGTGCTTGGGAGTTCGAGCCTTATACTGATCAGTTTTTGGACGGTCCCCAGTATGGCATTAGTCCCCCTCCCTGGGACGTTGTGGTGGAAGTCCCCCCCACATACACAGACTCCAAGGTGAAAGTCAAGGTGCCCCACTCCTCGTTCGTCAGGACGCGGTGTACCTTCTGCCATGGCTCTGGTCGACACCAAAACAATAGATGCACGAGCTGTCACGGATCAGGCCGGAAAAGATGCACCTTCTGCTCTGGAAGAGGACATAAAACATGCCCTTCttgtaatgggaaaaaaaacctGATGCATTTCATTCAGCTGACTGTCACATGGAAAAACCACGTGTTTGAGTACGTCCCAGATCGGATACCTGACTTTCCTGTCAAGAAATTTGAGAAGGTGGCTGGAGATCCATTCTTTGTTGATGAAAGCATCTTGGTTTACCCCATAGTGGGCTTTCCAGATGAGGAGATCTGTGAGGCCTCAAAGAGGGGAAACCAGGAGCACTTATCCACTTTCTCCTCAGTTAACCGCATCCTTCAGCAGCGTCAAACCATTGAGCTCATTCCTCTGACTCACGCCTTCTACGACTACAAAGGACAggattataactattttgtatatGGGATGGATAACAAAGTTTATGCCCCTAAATACCCCTCCAGCTGCTCTATTTTGTGAAGCGTGTTTGACatcaattattgtttttgaattaaaaaaatacatgcttttaaaaaaaaacattaaccaaGTAAAATGTACTCTTATAACATGAAGCGCAGGTTCGTATACAGAATTTgatgtaataaattaatgattcTTACCTGtacactatttttaaaattctcttgcaacattttaaaattgtttttaatttcggGGTGAGAATTAACTaaatctggattttttttaattattatttttttggagcTGGATTCTAGTATAAATTCTACTAAGACTACTCCCTTCAGTAATTCTTGGATTAAGTGGTCGATTGAACACTTTATTGCTGTGAACTAATATTGCCTTACTTCATCTCACTGTGTTATAGGTAAAGTTATTTAAGGGAAGCAGGTGGTATTTCTGATAATTTACCATAGTAAAtcaaagtgttaccaaaatgaAGGTTTTTGcttatttagtttaaaacatGGTAAAACAAGATCATTTTGAAAGCAGGGCAAATgattaaacagttttaaaatgtttataaaggaaCTCTGTTCCTAAAAATACCTAAGTGTTTGGACCAGGAAATGACAACCGTTAAAGGCAAGAGTGATTCAGTTAACCATGGTTTGACACAATCTTGGCAGATCAACATATCTTAATTCAACTGCTTTCTCTTGTTATTGTCTACAAAGATGTCTCTTTTATTGACTTTGTTATAAACCTGCAGTGCCTTCCAGTTCTGTTACGATCTTTCTCCCCTGAATGccttttctttgaaatgtttcaaacTCTGTGAAAAATCTGCTTAGTTACATTATCTTGGCATTCCTTACACAAGTGTGTTATTTCACAACTCTGAGTGGAGAGATTAATTTTGTGgactcttctttttttttatcatggtGGCTATTAACAAATAAGGGCTTTCTATATTTTGGGTTTCTTTTGCAAACTTTTTATCCTAATCTATGAATATGTCCTGTCTGTCTCCCTATTTTGTAAGATTTTGAGTTCTGTTCTGTACTTTCAAAATATGGGTTAATTGTGGTTCTTATTTTTTACatcatttgtaataataataataataataaataatatgtatatccCTGTGTTTTCTTAAgcataataatgttaaatctgTGACCATAAACATTTCtccaaataatgtattcaatggAGTGGCTGAAACCATGTGTTGTGTAATTTGAGTCTTTGCCCAGCAGATGTTTTTGACTTGCATTATATGTTTCATCCGGACCAAAgcattactttattattttttttataatatgtatgtacattGTTTTGAGTAGTTATTGGAACGCTGTGGTCTCTTATAGCAGGTCCATAACTAATTTCTGTTGACATTCCTCTTTCATAGCAGAGCACATTAcaacacaaatgaataaaaacaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21437 lncRNA upstream 50790 39251500 ~ 39254490 (+) False AMCG00016979
TU21428 lncRNA upstream 225383 39079415 ~ 39079897 (+) True G17274
TU21363 lncRNA upstream 499334 38754521 ~ 38805946 (+) True G17230
TU21350 lncRNA upstream 679257 38625526 ~ 38626023 (+) True G17221
TU21343 lncRNA upstream 768947 38536061 ~ 38536333 (+) True G17214
TU21543 lncRNA downstream 466968 39790089 ~ 39790567 (+) True G17361
TU21569 lncRNA downstream 945304 40268425 ~ 40284772 (+) False G17381
TU21571 lncRNA downstream 945304 40268425 ~ 40284772 (+) True G17381
TU21617 lncRNA downstream 1893374 41216495 ~ 41216809 (+) True G17419
TU21622 lncRNA downstream 1922181 41245302 ~ 41245519 (+) True G17424
AMCG00016981 mRNA upstream 10562 39271273 ~ 39294718 (+) True AMCG00016981
AMCG00016979 mRNA upstream 53559 39239073 ~ 39251721 (+) True AMCG00016979
AMCG00016976 mRNA upstream 504459 38786350 ~ 38800821 (+) True AMCG00016976
AMCG00016971 mRNA upstream 780503 38513220 ~ 38524777 (+) True AMCG00016971
AMCG00016973 mRNA upstream 813236 38479332 ~ 38492044 (+) True AMCG00016973
AMCG00016983 mRNA downstream 52139 39375260 ~ 39396596 (+) True AMCG00016983
AMCG00016982 mRNA downstream 76636 39399757 ~ 39429289 (+) True AMCG00016982
AMCG00016984 mRNA downstream 346079 39669200 ~ 39788816 (+) True AMCG00016984
AMCG00016985 mRNA downstream 467812 39790933 ~ 39797563 (+) True AMCG00016985
AMCG00016986 mRNA downstream 475014 39798135 ~ 39800651 (+) True AMCG00016986
TU21320 other upstream 801648 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 5204417 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 5257560 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 5632660 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 6447840 32856361 ~ 32857440 (+) True G16289
TU21955 other downstream 3068176 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 4803093 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 5331531 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 10079598 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 10390403 49713524 ~ 49721471 (+) False AMCG00017183

Expression Profile