RNA id: AMCG00016981


Basic Information

Item Value
RNA id AMCG00016981
length 1402
RNA type mRNA
GC content 0.49
exon number 12
gene id AMCG00016981
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 39271273 ~ 39294718 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTTGGGTGGAAGTGATTCATTTCCGTTTCCTCTGGTTTCATAGGATCCCATCCATTACTGAAGAGGTGGCCCGCAAAGCATTTACTGATTATGTGAACAGTAAGTGCTGTTATAGCTCCAGTCCAGTGGAAGAGGCAACGTTCACCAGCCTTGAAGCACACAACACATACAGGTATCGCCTGGAAACCTTCACTGAGTCCAGATCTACGGAATGGTCCAACGAACCTTTTGAAGGTCAGCCTGTAGATGCCTTCACCCAGGCGGCACCTGGTCCATGGAATGTTCCAGTTCAGACCCCAGAATTGTTTAAAGATGCCACTCAAGACATCAAGGTCCCCTGCACCTCTTCTGTCAAGGTGTATCCTGTGCAAGGTTTTCCTGACCCAGATATTTGCCAGGCGGCTCAGAGACTGGTGAATGAGCACCAAACGAAGTATGCAGCAACATCTCGTGTTCTGCAGCAGACACTTTCTacactgcatttgtttattgCCCTGCCTATTGTCTTCTGCAGAATCCCTTCCATTAGTGAAGATCTTGCCAAGGAAGCTCTTCTGGAGTATGCTTCCAGCAAGTGCTGCTACAGCACCAAACCTGCCAAGGAGCTGGTGTTTAGTGAGCTTCAGGTACACAACACCTATAGATATCGTCTGGAGACCTTTACCGAGTCCAGATCAAAAGAGTGGGACAGCGAGCCTTATAATGGACAATTTGTGGATGCCTATGGAGGTGTGGTTCCAGGCCCCTGGGAGTTGGCTGTCCCAGTTCCTGCActgtttaagaaaaacaagacatctGTCCGAGTCCCTCACACATCTTCCGTTAAGGGCTGTCACAGCTGCTTGGCTTTGGGCAGATCTGCTTGCCAGAAGTGTATCACATCTGGAAGGATGCAGTGCTGGGTGTGCAATGGGTCTGGAATGCATTTATCTGATCGACGGTGCCATCATTGCAACGGCATAGGTCGCGTCAAGTGCACTTCTTGTGGAGGAGTTGGGTCACAGACATGCTCTACCTGCAGGGGAAAAGGACAACTTCTCTGCTACCTTAAACTTGTTGTGAAATGGACAAACAACGTAAATGAATGCGTGGTGGACAAGAAGTCAGGCTTCCCTGTCGATAGGGTCTCTCAGGTCACTGGAGAGACTGTCTTCTCTGATACAAATCCATTGGTTTATCCCATCACGGGTTTCCCTGACAATGCTATCAATCATGCCTCATACAATGCAGTGACAGAGCACCAAGCCCGGTTCCTCTCAACTTGTCGTATCTTGCAACAGGTAAGCACCGACAACTGGGCCTTTAGCATAGAGGTCTCACTAAGAAATGTACAGGGTGAGCTGGTCTGACACATGACCACTATGCACCACATCTTAAACTTTACAACTGACTGTACCC

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21437 lncRNA upstream 16783 39251500 ~ 39254490 (+) False AMCG00016979
TU21428 lncRNA upstream 191376 39079415 ~ 39079897 (+) True G17274
TU21363 lncRNA upstream 465327 38754521 ~ 38805946 (+) True G17230
TU21350 lncRNA upstream 645250 38625526 ~ 38626023 (+) True G17221
TU21343 lncRNA upstream 734940 38536061 ~ 38536333 (+) True G17214
TU21543 lncRNA downstream 495371 39790089 ~ 39790567 (+) True G17361
TU21569 lncRNA downstream 973707 40268425 ~ 40284772 (+) False G17381
TU21571 lncRNA downstream 973707 40268425 ~ 40284772 (+) True G17381
TU21617 lncRNA downstream 1921777 41216495 ~ 41216809 (+) True G17419
TU21622 lncRNA downstream 1950584 41245302 ~ 41245519 (+) True G17424
AMCG00016979 mRNA upstream 19552 39239073 ~ 39251721 (+) True AMCG00016979
AMCG00016976 mRNA upstream 470452 38786350 ~ 38800821 (+) True AMCG00016976
AMCG00016971 mRNA upstream 746496 38513220 ~ 38524777 (+) True AMCG00016971
AMCG00016973 mRNA upstream 779229 38479332 ~ 38492044 (+) True AMCG00016973
AMCG00016974 mRNA upstream 799382 38468150 ~ 38471891 (+) True AMCG00016974
AMCG00016980 mRNA downstream 10562 39305280 ~ 39323121 (+) True AMCG00016980
AMCG00016983 mRNA downstream 80542 39375260 ~ 39396596 (+) True AMCG00016983
AMCG00016982 mRNA downstream 105039 39399757 ~ 39429289 (+) True AMCG00016982
AMCG00016984 mRNA downstream 374482 39669200 ~ 39788816 (+) True AMCG00016984
AMCG00016985 mRNA downstream 496215 39790933 ~ 39797563 (+) True AMCG00016985
TU21320 other upstream 767641 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 5170410 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 5223553 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 5598653 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 6413833 32856361 ~ 32857440 (+) True G16289
TU21955 other downstream 3096579 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 4831496 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 5359934 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 10108001 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 10418806 49713524 ~ 49721471 (+) False AMCG00017183

Expression Profile