RNA id: AMCG00016992


Basic Information

Item Value
RNA id AMCG00016992
length 222
RNA type mRNA
GC content 0.54
exon number 1
gene id AMCG00016992
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 40888359 ~ 40888580 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACTTAAGTGCTTCTGTGGCCCTGGGGATGCTCTATATGCCGAAGGTGTACATCATCATATTCCATCCGGAGCTCAACGTGCAGAAGAGGAAACGCAGCTTCAAGGCGGTGGTCACAGCAGCTACCATGTCCTCACGGCTCTCTCACAAGCCCAGCGACAGGCCCAACGGAGAGGCCAAGACGGAGCTGTGTGAAAATGTGGACCCTAACAGTAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21612 lncRNA downstream 10294 40873372 ~ 40878065 (-) True G17414
TU21574 lncRNA downstream 603536 40280538 ~ 40284823 (-) True G17384
TU21573 lncRNA downstream 622098 40264597 ~ 40266261 (-) True G17383
TU21548 lncRNA downstream 1087519 39794975 ~ 39800840 (-) True G17364
TU21500 lncRNA downstream 1491504 39394493 ~ 39396855 (-) True G17325
TU21621 lncRNA upstream 356346 41244926 ~ 41245225 (-) True G17423
TU21724 lncRNA upstream 713344 41601924 ~ 41605395 (-) True G17505
TU21787 lncRNA upstream 1048346 41936926 ~ 41938534 (-) True AMCG00017014
TU22026 lncRNA upstream 1655780 42544360 ~ 42549418 (-) True G17755
TU22024 lncRNA upstream 1661745 42550325 ~ 42551773 (-) True G17754
AMCG00016987 mRNA downstream 1033245 39827240 ~ 39855114 (-) True AMCG00016987
AMCG00016978 mRNA downstream 1650460 39218824 ~ 39237899 (-) True AMCG00016978
AMCG00016977 mRNA downstream 1994840 38822108 ~ 38893519 (-) True AMCG00016977
AMCG00016969 mRNA downstream 2374592 38506156 ~ 38513767 (-) True AMCG00016969
AMCG00016968 mRNA downstream 2517109 38360534 ~ 38371250 (-) True AMCG00016968
AMCG00016990 mRNA upstream 100686 40989266 ~ 40990660 (-) True AMCG00016990
AMCG00016991 mRNA upstream 148772 41037352 ~ 41038674 (-) True AMCG00016991
AMCG00016993 mRNA upstream 218111 41106691 ~ 41108161 (-) True AMCG00016993
AMCG00016999 mRNA upstream 640076 41528656 ~ 41530149 (-) True AMCG00016999
AMCG00017002 mRNA upstream 698543 41587123 ~ 41596403 (-) True AMCG00017002
TU21144 other downstream 2829420 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 2829420 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 3129888 37758157 ~ 37758471 (-) True G17032
TU20574 other downstream 6780418 34106690 ~ 34107941 (-) True G16563
TU20442 other downstream 7374780 33488725 ~ 33513579 (-) False AMCG00016891
TU21619 other upstream 328071 41216651 ~ 41217231 (-) True G17421
TU22128 other upstream 1920131 42808711 ~ 42864616 (-) True G17842
TU23267 other upstream 7600547 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 10542275 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 10557007 51445587 ~ 51449786 (-) True G19335

Expression Profile