RNA id: TU21787


Basic Information

Item Value
RNA id TU21787
length 637
lncRNA type sense_over
GC content 0.44
exon number 2
gene id AMCG00017014
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 41936926 ~ 41938563 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTAGCAACGCAGTTGTCCACACTGCTGAGAAACTCGTCGCCAAACCCGGAGGCCGACAGCGAGATGCCTACTTCTCAGGGGTTGAAGCCCACCAAGGGAGAGAGACTGAAAAACTACAGCGTCCTGCCGCCAATTCCCACTCCAGCTGCTGTGCTGAGGGCGAGGACGGGTGAACTCGAGGGGGTGGAAGACAGCAGGACGGCCATGCAGCACAAGCTGATGAAGCACCGGAAAAGCAAGCAACACCAGCAACTGCTGAACCAGATAGTGTAGGTCATTCACCTCCTCTTGCCCCTGACCAGGACCAGCCCTCCTCTGTGTGACCTATACATGCAGCATAAATACATCAGTGAGGGATTAATTTTGAATGAATTCCAGTGTCCAATGatgacgtttttttttttttttttttcattgtcccatcttttatgtgatcatcttctaggtcttttcaaatctttcatctgttctttaatgtgtccattttaaaattcatactctttcaatgatttaacattttgaatgttCTCAACTTTTTCCATGCTGTTATCTAGTccacacacaatacatatataggACATTCTTTATAGCTTTGCATCATGGAATTTGAAGTgctcaataaaaatacatgttcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21724 lncRNA downstream 331531 41601924 ~ 41605395 (-) True G17505
TU21621 lncRNA downstream 691701 41244926 ~ 41245225 (-) True G17423
TU21612 lncRNA downstream 1058861 40873372 ~ 40878065 (-) True G17414
TU21574 lncRNA downstream 1652103 40280538 ~ 40284823 (-) True G17384
TU21573 lncRNA downstream 1670665 40264597 ~ 40266261 (-) True G17383
TU22026 lncRNA upstream 605826 42544360 ~ 42549418 (-) True G17755
TU22024 lncRNA upstream 611791 42550325 ~ 42551773 (-) True G17754
TU22171 lncRNA upstream 1027822 42966356 ~ 42974433 (-) True AMCG00017051
TU22214 lncRNA upstream 1297271 43235805 ~ 43236036 (-) True G17910
TU22218 lncRNA upstream 1341703 43280237 ~ 43280863 (-) False AMCG00017061
AMCG00017012 mRNA downstream 1218 41886980 ~ 41935708 (-) True AMCG00017012
AMCG00017005 mRNA downstream 51070 41877616 ~ 41885856 (-) True AMCG00017005
AMCG00017006 mRNA downstream 59814 41856714 ~ 41877112 (-) True AMCG00017006
AMCG00017008 mRNA downstream 83914 41850506 ~ 41853012 (-) True AMCG00017008
AMCG00017003 mRNA downstream 112746 41811403 ~ 41824180 (-) True AMCG00017003
AMCG00017013 mRNA upstream 833 41939367 ~ 41941609 (-) True AMCG00017013
AMCG00017015 mRNA upstream 19076 41957610 ~ 41969647 (-) True AMCG00017015
AMCG00017016 mRNA upstream 32659 41971193 ~ 42008349 (-) True AMCG00017016
AMCG00017030 mRNA upstream 572523 42511057 ~ 42514614 (-) True AMCG00017030
AMCG00017036 mRNA upstream 728178 42666712 ~ 42670113 (-) True AMCG00017036
TU21619 other downstream 719695 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 3877987 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 3877987 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 4178455 37758157 ~ 37758471 (-) True G17032
TU20574 other downstream 7828985 34106690 ~ 34107941 (-) True G16563
TU22128 other upstream 870177 42808711 ~ 42864616 (-) True G17842
TU23267 other upstream 6550593 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 9492321 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 9507053 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 9507053 51445587 ~ 51449786 (-) False G19335

Expression Profile