RNA id: AMCG00017023


Basic Information

Item Value
RNA id AMCG00017023
length 4486
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00017023
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42553219 ~ 42561656 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGAGGTTTTGACTCCGTGTCGGAttgtctttctgtttgtgtCACGTTACCCTTGGAGCAACGAGGAAGTAAAGACATGCGTTTGTTGTCGGATAGGAGTGCCTTGAAAAGCCGGTATTACGCTGAACTTAGGAAAGCATTGAAAGCAACTCCTGCGTTTAGCACTGAGTGAGTGGCTGTAGTGCGTCATACCTCCGGTTCCGTGTTTCTGTTCACAAATAGGGCTTGACGGTTTGGTGCGAGAAggtgaaatatacatattacacTTTTTAACTGTGTTGGATTCACTCTTTATTGAACGAACgcacttttaattatttatggcATCCCGTTTGTGGAAGTAGACGAGTTCCAGCTCGGACACAACtgtctatattatattattatattcgCTGACTCTGGACTAAATGATGTGTTGCTGTGGTAGGACAACGAGAGACACGAAACGCAACGCTTCTGGTCTGAGTTACATTCAATTAAACGACGGTTCAGTTTTAATGGACTTCACGATGTCCGACTAGCATGCATCAATGGCGAAAGTTATACATGTGCACTTACCCATTTCCGCCTCAGCTGGGTAATAAACTCTCCGtgacttaatttaattatatttctgacCGTTTCTCGTCTCgtcttttgctgtttttgtttctcgaGTCGTGGATGTTTAACTTCATAATGTCAGTGAGAATGATGTGCGAACTACTGCTTACAAGAGGTTGTACTTGATTAAGAAAAGCCTgaagatatttgtatttatttttaatcttatctaaaatatatcttattttaaatatatattcgtcataattatttatttggagCTTTAGTTGCGTGGAAGATTAAGGTGGAACACCAAACCAATTATCCTTGACGAAGACAGCTGCGAGGTGTAGTGTACAGACTTGAAAACTCAAGCGCCGTGATGTGGAGTAGGTGTAACAACAGTAGTGATGTGCATAATGCTGTGCAGAGTGATGGGACACGGGATGCATACAACCACTCAGCGCAAAATGGTGATCCGAGTCCAGACCCGGCTGTGGATACCCCGGCGTCGGATGGCCTCCAGCTCTCGGTACCCAAGGGGATCGACTTGCGCCGTCGGAGGAAGCTAGTCATTCACATGGACCTCAACAACACCATCCTGGTCTCTGATGCCGTGACCAGGCAAGGCACAGTGGCTGCATTGGACTATTTTATATCCACAGTCACCTGGGGGAAACTGAATAAGCAAGGTAAATGGGAGTGCATAAGTGAGGcaccctccctccttcctccaTGCAAGGATGCAGTGAGTTACTACTCCCAGTTCGGCCGGGTCTCTGGGTTCACGGCTACAGCCGAGGGGAAGCGCTTCAGGGCCGTACTGGAGGAGCACCTGGCCCTGCTGCAGTGGCCTGGGGAGGAGCAGGACCGAGTGCTGGCGGTAAGGGGTGAGGATGGCCGGCTGTACCACTGGATACTGCCCTCCTTCTTCCAGCTGTTGCAGGACCTGGTGGCACAGGGCAGGGAATTCACCGTCCTCTTCCGCACCTTCGGAACAGACCTGCCCCGCGTCCTACTGGCCATGAACACCGTGCTAGCAGAAGGGACGCATCCCCTCTTCCCAGACCTGCCGATTCTTGGGCTGACCTTGAATGAGACGCTGGGGAAGATCCGTTGCAGTAAGAGAGACGTGGTTCTGACCCGGGGTTTGGAGCGTGTATCTGCGCGGGACAGCGAGAGGGGCCTGTACCACTACCTCAGCTCCCTGCAGGGACTGTGCGGCTTCCAGGACCATTTTGACTGGTGGGCCCGAAACTCCTACTCACTGCAGGGAGGAAAGCCCATGTGGATCGACCCCTTTGATCCCGATGTGCAGCACATCTTCATAGATGATAATATTCGAATGATCGATGAGGATACCATTGTCCATCCAAAGGTGTTTCTAGAGCCTGGTGGCACTCAGACCCGCACGGCCTCAACCTCTGAGCTCTATGATATCAGCCTGGTTCAGACTGATCTCCTCAGGGCCATTTCAGACCACTGCTACTTCTCCAACTGCATCCAGATTTGCGAGGAGAACTATGAGAGGAACCTGCAGCAGGCAGACAGCTAGAGCTCCTGCTCTGTACTGTGGTTACCTCTCCTACTGCACACTGCCACAGCTGAGAGACGGGCCTGCACTCTGCTCAGTTTGTCACAGTGATATTTCTTAGATGTGGGAAGCTTTATAGTTGTGAACAGACTTGTATCTGGTGTATAAGTCAAAGTTCACCCAAGCACAGGCAACACGGTGAAGGGCAGAATAATCTTTTTCTGCAAGTATCATTTAGGGGAAAAGCTTTTACTTAACACTTGACCGAAGAGGACATATAAAGACATAAGTGAATGATGGAGGTTTTAAACATTTGGGGCTGGTTTGTGTTGTAAGAATCACCACTAATGACATCAGTGAGACTTGCTGTGTTACCTGATACAATCTCTTTGCagaaacagttaaaatatagataatgcacatttcattgcttccattaaatatataaatgtgtttgagaTGTTGAGAGATGCAAAGTTGTAGGAGATATACAATGAGCCTTACCTAAAGAAGTGCAGTGGAGCGTTTTAGGCCATTATATATGATTGACATTTACAAGGATTTGCTGACGGTGCACAGACAGattgtgaagtgtgtgtgtatatacacagctctggaaaaaattaagagaccatttaacattgatttctaaacttggagtggtctcttaattttttccagagctgtacatattGAAGGTTATTTCATGGCAACTGTAACATACCCAGGTCCTGTAGCAATTAAACTGCTATCTCCAATAGCAGGTTGTAAAGACCGGTCTCCATTTATTTGTACACTTGCCGTTACATAATAGTTCTTTAAATGctatttaattgtgtgtgtgtgttggttgcGGTAAATGTCTAGACTTTCTATAGCCAAAGATAGAGGCATTAAAGTGTACGAGTTATTGCACTGTGTTCATATTGTTACATGTCCATATTGTACCTCCACTTTAACATTGAGGAATATCAGGGTAgtatgtaaagaaaataagaagtCTGAACTTTAAACCACTGAACAAAGCCTGGCAGTATTCCAGGGAACCTGAGacttatgaattatgaatgatTACCTCATGGGAATgaagtttaataaaatgacTGGATACTGCACATCTTAAAGTGGGCATGAATCCTACTCTTGGCACAAATCTTTATTGCTGTGTTCCAGATCCTACCAAATGTCTCTCCTTAACCTTCACAGATGTAGTCTTCAATCACTATTATTGTTTACCTGCTGGGTCAAATTCATAGATGTAGCTACAGATTTCTGACAATATAGGAAAGGTGGATTCAGTTAATAGTTTACTTTTTTCTGTGAAGGATATTTGCGTGATAACCTCCAGTCCCTATTAACAATAGCAGCAGTGCACTATTCAACATTTAAGACTGGAGATGTTCATTATCACGGTCATAGAAATAGGCCTTTGACTGGATTTACCAAATATTTCTGTAACCTTTCACGGTGGCTCCTCgatgtttaatttaacagaataggatgcttgtttttttttaagtgaaaaatgtGCTTAATAACCTGTGACATGCCATTAATTTCTGTAGAAATTCCTTTCAGCATTCTGTGAATTTCAAGGTTGTTCATACAAAGTGATTTTCTGACTGTACGATTGACCCCAGATTCTCGCTGCAAGATGTCTTGTGCTCTTTTCTTAGTCATTCCTGCTTATGTTCCACTGTCAATAAAATCAATTGCAGCTGGATTATTAACGTCATCTTCTCCCTCCAATAActagagattttgtttttggtattcaGCTGTCGTTCATGGTtccaacaaacaataataaaaaatagttgAATCATACTTATATATGTTCCTTTAAATGCATTgccatgttttcaaatataaatgcaaGAAATCAGACCTGGTTAGACTTTTTTTATGAGGAGATGGGGCATGTTTGATATAATTAGCTACTTAAATGGTGCTGCAATCCTTCCACTGTGCTGGGGTCATGGAAAAGTGGAGAAGGGCTGTTTTCTCTTCAGTCCCCCCCCTGCCCCATTTAGTTCTAATGGGAACTAAAATCTGCCCAATGCACAGAAGAAAGTGCAAACCAATGATACACTAATTAGAGGGTAGTTTAATATATGAAAGTCATGTATTTAATCAAGTAAAGGGATCCTGTTTAAGAAATGGTTCAAATACAAGCGTGTTCCTTGGTGTTAAGTGTGTTCTCTTCAGTGAGACATATGTATAAGGTAGGTCTGATTAAAGCACAATGTGACCAAATGGGTCTGACTAAAATCATGCATTCACCCTCTTTCTGGATGACATCACTATATAATTTGGTAGTTTGTATGTTGGTATGACGCAGTAAGTGTGAACTGCACCACTCCCTTTTTATGACTGTGTTTAAGGAGCTTCTAGGTGTGTTTCTGTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21821 lncRNA upstream 574553 41976395 ~ 41978666 (+) True G17580
TU21741 lncRNA upstream 810446 41742350 ~ 41742773 (+) True G17518
TU21735 lncRNA upstream 836230 41713810 ~ 41716989 (+) True G17514
TU21717 lncRNA upstream 863020 41688010 ~ 41690199 (+) True G17498
TU21710 lncRNA upstream 879866 41671378 ~ 41673353 (+) True G17491
TU22180 lncRNA downstream 491430 43053086 ~ 43112636 (+) True G17882
TU22213 lncRNA downstream 674164 43235820 ~ 43236036 (+) True G17909
TU22284 lncRNA downstream 832637 43394293 ~ 43394499 (+) True G17969
TU22306 lncRNA downstream 908414 43470070 ~ 43470846 (+) True G17988
TU22305 lncRNA downstream 938514 43500170 ~ 43500476 (+) True G17987
AMCG00017028 mRNA upstream 1454 42515426 ~ 42551765 (+) True AMCG00017028
AMCG00017029 mRNA upstream 43591 42477751 ~ 42509628 (+) True AMCG00017029
AMCG00017027 mRNA upstream 93360 42428197 ~ 42459859 (+) True AMCG00017027
AMCG00017026 mRNA upstream 176284 42352071 ~ 42376935 (+) True AMCG00017026
AMCG00017032 mRNA upstream 242012 42310053 ~ 42311207 (+) True AMCG00017032
AMCG00017037 mRNA downstream 20696 42582352 ~ 42594094 (+) True AMCG00017037
AMCG00017035 mRNA downstream 62333 42623989 ~ 42630671 (+) True AMCG00017035
AMCG00017034 mRNA downstream 88198 42649854 ~ 42664428 (+) True AMCG00017034
AMCG00017038 mRNA downstream 154293 42715949 ~ 42719266 (+) True AMCG00017038
AMCG00017039 mRNA downstream 160821 42722477 ~ 42725222 (+) True AMCG00017039
TU21955 other upstream 155432 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 4049587 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 8452356 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 8505499 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 8880599 33668629 ~ 33672620 (+) True AMCG00016901
TU22431 other downstream 1564558 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 2092996 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 6841063 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 7151868 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 7990224 50551880 ~ 50552985 (+) True G19113

Expression Profile