RNA id: AMCG00017024


Basic Information

Item Value
RNA id AMCG00017024
length 1838
RNA type mRNA
GC content 0.46
exon number 10
gene id AMCG00017024
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42268889 ~ 42275683 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCTTCCTTTTCCCAGAAGAGCACGCATGATTGGCTCTCCGGGGTTCGCAACTTCCCTTTGACGTGAGCACGGCTGGCTGTCATTGGGTCGCAGTACCGAGCTAGAACGCCACTCAAATTAGAGGACAGGTCCAACATGGCGTCGCTGAGGTGTATGCTGCGATCCGGGAGGAATGCCGTCGCTGCGGTGCTCAGACGGGAGTTTCACAAGACGTCCCCAGCCGCCTTGCAGGTGACTGTCCGAGATGCCCTGAATCAAGCGATGGATGAGGAGCTGGAGAGGGACGAGCGGGTGTTTCTCCTAGGGGAGGAGGTGGCACAGTACGACGGAGCTTACAAGGTCAGCAGAGGATTGTGGAAGAAATATGGGGATAAACGGATCATTGACACTCCTATCACAGAGATGGGTTTTGCTGGTATTGCAGTGGGTGCTGCTATGGCTGGATTGAGGCCCATTTGTGAGTTCATGACCTTCAACTTCTCAATGCAAGCCATTGACCAAGTTATAAACTCTGCTGCAAAAACCTACTACATGTCTGCGGGCCTGCAGTGTGTCCCCATTGTGTTCCGTGGCCCCAATGGCGCCTCTGCTGGCGTGGCAGCCCAGCACTCCCAGTGCTTTGCAGCTTGGTATGGTCACTGCCCTGGACTGAAGGTACTCAGCCCCTGGAGCGCTGAAGATGCCAAGGGCCTGCTCAAGGCGGCCATCCGAGACGATAACCCAGTGGTGTTCCTGGAGAATGAGCTGATGTATGGTGTGCCCTTCGAGATGTCTGAAGAAGCACAGTCCAAGGACTTTCTCATTCCCATCGGAAAGGCTAAAGTTGAAAGACAAGgaaaTCACATTTCCCTGGTTTCACACTCCCGGTACGTAAGCCATTGCTTGGATGCCGCTGCTGTTTTGGCAAAAGAAGGTATTGAGTGTGAGGTCATCAACCTTCGCAGCATCAGGCCTCTGGACGTCGAGACCATTGAGAGCAGCGTGATGAAGACCAACAACCTGGTGACAGTGGAGGGGGGCTGGCCACAGTTTGGAgtcCAGCCTTCAACTATTTGGATGCTCCAGCTATCCGAGTGACCGGCGTAGACATCCCCATGCCTTATGCCAAGATTTTGGAAGATAATAGCGTACCTCAGATAAAGGACATTATATTATCAGTGAAAAAGACATTGAATGTCTAAGTACAATGGTTAATGTTTGgtctatacatttattttacttcaccTGTTGACACTGAAACTTAGTAAGGTTTTGCTCTCtaagttatttttcagttgttcaTTCATTATATTTGACTTTCaagaaaagaataagaaaaaagtcTTGCAAAATGTCATTCTGAAAATGTCCTAATAAACCCTTTCATGGTGTATGCTTTGTATAGATCCAACCAATACTCTTATTCTGCTGTTACATGTTAGGTTTGGAACCCAAAtggttgttttaatattaagatCCACCATACctgtttatatttgtactatattgttttgttttgggttttccTTAATCTATTTAAACGCACAGGGTAAGGTGGTAAAAACTGATATTAATTATgagcaatgtgtgtgtgggggggggggggagaagtgtacaaacaaattaaacatgatcTAAGCCCCAGAGATGTTTTGACTGTGATTCTTAAACCTTTTAACTTTAGtcttcaaatgaaaatggccCAGTCatagagtttttgttttctgtatttactATAGGGCTCTGTTGTTAATAAAGCCAATAGTACTCCTGTACAGTTAATACAGCTCAGTGTTTCTGTACTGTTAATGAAGCCCATTGAGAGATCTCTTTGCTCTACAGTAATATTTATGCGTC

Function

GO:

id name namespace
GO:0006086 acetyl-CoA biosynthetic process from pyruvate biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity molecular_function

KEGG:

id description
K00162 PDHB, pdhB; pyruvate dehydrogenase E1 component beta subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21821 lncRNA upstream 290223 41976395 ~ 41978666 (+) True G17580
TU21741 lncRNA upstream 526116 41742350 ~ 41742773 (+) True G17518
TU21735 lncRNA upstream 551900 41713810 ~ 41716989 (+) True G17514
TU21717 lncRNA upstream 578690 41688010 ~ 41690199 (+) True G17498
TU21710 lncRNA upstream 595536 41671378 ~ 41673353 (+) True G17491
TU22180 lncRNA downstream 777403 43053086 ~ 43112636 (+) True G17882
TU22213 lncRNA downstream 960137 43235820 ~ 43236036 (+) True G17909
TU22284 lncRNA downstream 1118610 43394293 ~ 43394499 (+) True G17969
TU22306 lncRNA downstream 1194387 43470070 ~ 43470846 (+) True G17988
TU22305 lncRNA downstream 1224487 43500170 ~ 43500476 (+) True G17987
AMCG00017025 mRNA upstream 1176 42246354 ~ 42267713 (+) True AMCG00017025
AMCG00017031 mRNA upstream 23860 42243601 ~ 42245029 (+) True AMCG00017031
AMCG00017020 mRNA upstream 29602 42222768 ~ 42239287 (+) True AMCG00017020
AMCG00017019 mRNA upstream 55506 42212609 ~ 42213383 (+) True AMCG00017019
AMCG00017021 mRNA upstream 58582 42156679 ~ 42210307 (+) True AMCG00017021
AMCG00017033 mRNA downstream 14063 42289746 ~ 42290831 (+) True AMCG00017033
AMCG00017032 mRNA downstream 34370 42310053 ~ 42311207 (+) True AMCG00017032
AMCG00017026 mRNA downstream 76388 42352071 ~ 42376935 (+) True AMCG00017026
AMCG00017027 mRNA downstream 152514 42428197 ~ 42459859 (+) True AMCG00017027
AMCG00017029 mRNA downstream 202068 42477751 ~ 42509628 (+) True AMCG00017029
TU21320 other upstream 3765257 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 8168026 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 8221169 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 8596269 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 9411449 32856361 ~ 32857440 (+) True G16289
TU21955 other downstream 115614 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 1850531 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 2378969 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 7127036 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 7437841 49713524 ~ 49721471 (+) False AMCG00017183

Expression Profile