RNA id: AMCG00017025


Basic Information

Item Value
RNA id AMCG00017025
length 4956
RNA type mRNA
GC content 0.43
exon number 16
gene id AMCG00017025
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42246354 ~ 42267713 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGACGCTGTGTCGCTTGTGCTGTTGCGAAACCGTGTAAAGCCCTCCCTGCGGCTCCACACGCCCGGCCCGAGGAAACGAAACTACGGCGGGGCGAGCTGTTCCCGACGGACACTAGGACCGCGCAGGAGACGCGCCCCCTCGCACACTGACAAGCGGTGTCTGGACGGGGCTCCGCTCTTGTCAGTTGGTAAGCGCTCTTCCTGTATGAAAACCATCACTGAATAACTTCTCCTCGGCCGCCGCTGCTGTTCCTCCCGCCCCGTCCCTCCTCGGGCGCCTGGCATGGCGTTCATGGAGAAGCCGTCTGCGGGGAAGATCCTGCTGGACGATACTGTGCCGCTGACCGCCGTCATCGAGGCGAGCCAGACCCTGCAGTCCCACACGGAGTACATTATCCGTGTCCAGAGGGGCGTTTCCCAAGAAAACAGCTGGCAGGTCTCTGGCCTCAATCTGCCTCTTCCACCCAAGAAACTGATTGGGAACATGGACAGAGAGTTCATTGCAGAGAGGCAGAAGGGACTCCAGACCTACCTGAACTTCataacaacacagcacatcctGTCTAGCTGTGAGCTGGTCAAGAAGTTTCTGGACACCAACAATTACTCCGCTAGCTACACAGaAATAGCCTTACAGCAGGTTTCCATGTTCTTCAGGTCTGATCCGAAGTGGGAGGTTGTGGAACCATTGAAAGATATAGgttgGAGGATAAGGAAGaggtattttttaatcaaaaacaaGGATCAGCCCAAGGAACGACAGGTCTTAAGTTGGGCTGACCTAGGTCCTGACAAATTCCTGTCTGACAAAGACCTCCAGTCAGCAATGAAGCTTCTGCCCACTGTGTCAAATCCCTACATCTGCCCAGTTACCTTTGCTACAGCCAGTGAGTCCTCTGCACTGGTAATCCGGGTGTTCAGTGAGAAAGGCACGCTGAGGGATCACATCTGTAAGGCAAAACCGAAAGAGCCTTTCCTGAAGAAGTATTGTAATCCCAAGAAGATCCAGGGCCTAGAACTCCAGCAAATCCGCACATATGGAAGGCAGATATTGGAGGTCCTTAAATTTCTTCATGAAAAAGGATTCCCGTATGGTCACCTTCATGCCTCAAACGTCCTGTTAGATGGAGATACCTGCAAGCTGCTGGACATCGAGAACTCATTACTCGGTCTTCCCTGCTACTACAGGCCCCATATAACACAATTCAGGAAAATCAATacgaCAGAGAGCATTGACGTTTACTCCTTTGGACATTTACTGTATGAAATGACCTATGGACGCCCTCCAGATTCTTTCCCGGTTGACCACTTTCCTCCAGCTCCCTCCACCTCAGTAGTGTCTGTGTTGCAATCCATCCTCTCCACTGAAGCCTGTAAAGCTGGAATGCCAACCGTTGCCCAACTATTGCAGACTCCACTGTTCAGTGATGTCTTGCTGTTCAACTCGGAGAAACCCCAGTTCAAGATATCCACTAAATTAAAAGATGCCTTGAAAAATGCCAAAGAATGTCTGGAAAGACGACTGCAAGAGGAACAGAAAACGAAATCCAGACAGTCAGCATACGAAAATGAGGAGGATCTCTCTTCAAAGTGCAACAACTCCAATAATTCTGGCTCAGGAGCAAGCTCCCCTCCAACATCACCCTCTTCTCCTACTCCACCTCCCACTGCAGGAGTGCCACCAgcacccccacctcctcctccgcctgctcctccgcctcctccacTCCTGACTGAGCCACGCCCGTCCCAGTCCTCCCCGCTGCCTGTGAGTGATCCGGGCCGTGGAGCCTTACTCAGTTCCATTCAGAACTTCTCCAAAGGAAGGCTGAAGAAAGCCGAAACCAACGACTGCAGAACACCCCACGTGTGACAGCCACGCTTGCAGCTCACAGCTCGTGCTCCTTCTCAGCGTGCTGCTATCCTTTCCAGTGATTCTCCTTTGTGTCAaccagacactttttttttttccttcttcctttgTGTACCTTTTTCTGTccatggagagaaaaaaaactctaaTTCTGaagtgattgtttttgtttttgttttttttttgttacttgaATATCCTCACGCCAGCaccagtgtgtgagtgtggcaGTCAGGACTGGCCTGAGGTGAAATACATGTGCTAAGGGACATAAGCCCAATTACTGTACTTGCTTGGTTGTTCTTTGGggaatatattgtgtatttggcATGACTCACCTTCTGAGAGACTGCCTCAGACTTTAGCTTCTTCTGTTGAACCTCATCCATGGATATAGCTGGAATGTGTGTCTGCGGTCAAAATAACATTGAATTGTATCAGCCCTTGACCACTTTAGGCCCTGACTGCATTACCTAAGAAGTCACAGTCATCAGTGACCAAtgttgctaaaaaaaaatgacatttcctCCCCACACAGTCTTCACTCCCCCCTGccaaaactttaaaaaacatttccattgctTACGAAGCACTTTATTtactcccctccccccaaaatgtttctaaaatgaAGAACAACAAATACTGCAGATGTAATGGTTTGTCTGGGCTACcacaacacaaatgtgtttttttttctagtcGGGTATTGTGCCAGACTTTTGTTGTTGcctagagaaaaaaaactgttttacctGTAACCGGGATAAATACTGGCTCCCTTAAGAGAAATGTTAGAAAATGAGCTTAAGAGCCTGCTATATGTTGGCAGGCTATCAGGCCCATCATTATGATCCACTGATCTTAGTCTTAGTCTTATTCAACACCATTGAGTTTTGTTCCAGCCATCTTCAAAACCTCTGTCTTCACACCGCTAAAGGGTGTTTTTTTCAGACTGAGAACCAGCAAGGAAATACCTTATTTGTGAACATTGTAAAAATTCTATTTGATGCAGCACTTGTGCTTTACATATGGGATTTATTTTGATTctgaaattgcttttaaaaccaCCACAAAAACGAGCAGACACAAAAAAGGCCAAATAAGTGAATGTTCAGCCCTGCCTGTTTTCATCCTTTAGTCTTCAGCTGTATTTAGAGATGTTGCTGCGGCTGTATTAAATAACCATGTGATGGACTGTTTTTTTGTagcactttattattgttagaTTTAGTAATACCAAACAGGAATTGTAAAGGCAAACATGCTGAGAAGCTTACAGTGTGCCAAATTGCACCAGGAATCTCCCAGTGACTAGAGGGGTACCAGACTGACACTCGGGTCTTgcataagaaaaatatacagttgttTAATGCAGACACATACTATCGATTCCCAATAGATTTTTCTCAACCACAGTTTCAGAGAAGGGCTGGAGGTATATACTCACTTGTTTCTGCTTTTCAGAATTGGactgttttatcatttattGTAGCACagttgtattcatttattcaatGCTTGGGTATACTAGTTGTGCTCTTGAATTTAAGTGAGTGAGGGCAGTGGTACTGGGCAGATATTTGGCACATAAATTcatagtttgtttttccctccTTCTCTTGATGGTAAATTCAGACATTGGAGTGCTTTAGGTCTTGAGAGACTTCTCAGTTTCTCTCCTGTTATGCCAATGGTAAACATATACCGAAACATTCAGAGTAAGCCAATGTAGTTTTAAAGCCAgacacagatttaattaaagctGTGTCCACACAATTTGTTTTATCCACATTAGGTTCTGAAACGCTAAACCCTGGATGTTGCATTCTCTGACTGATCTTGGCTactcttctgtgtgtgtgtggtttttagCATGTTCTCCAGctgttttaatgttgtgtttctTGACTGCATTTCGCAAGAGTAAATATGAATACTTGAACACTGGTTTCCGAAGAGAGTTTGATTTGGCTCACAAACCGCAagaacattaatatattaaaaagcttCATGCAGTATGTGTATGTTTAGTGCCCTGCCTCACCATTGATGAAAAGGAATAAATTATGTTCTGGGGAGCTCATTTTTATAGGCTGTAATATAACCAGTAAGTGAGTAAGATTATAAGATGGAGAGCTAAGCATCAAAAAAGCTCAATGTTGCTTCAGTATGTCTGCTATACACATCATTGGCTTTGGTGTAGTGTGagaaacaattatacatttcttttattatttgcatatgaCTGCGCTGACAGCCATTGCTATTTTTGCACTTAAAAACATCACCCAGAAATTggtacagaaaacacaaaaacactgaatgtgaaacaaaatgtcttaCACACACAAAGCGCTGCCCGTTGCTGTTAACTACAAGAAAACAGATTTGCCAGCATCAGCAAAAgccttaaaataaacacaaaattagAACTGCACACATTAAAATTGATGTTCCAAACATGCTACCATATATTCTGTCACTTTTTAAATGGAACTTTTGACATGCTTTACTGTTTGGCAAACATGACAAGTAAATTTAACCTTCAGTAGATTTTCCTGCAGTCCAAATCCTGGCTCTTACTATTGTTTGAGCAATTGTCGGGACTGTTTGGAGATTTGTAGTCATTGTTTGCCTTTCAGTAAACTAAGTTAAGAGTAAACAAAATagtttctgaaaagaaaagtgatGTATtccttcttctcttttttctgtttgttacaagtgcttaaaattattttatctgtagTCAGAAGTGCAGAACCATTAGTACCTATAATTATACAGAGATTATCAGtgtgatgtgtgtatatatgtgtataaaaaaaaaaactttcatgtAACCTGTGATAAAATCTGTCagactattttattaaaataatggatGAACCTTCTGTGCATCTGCCTTGTTTTCTGTATCCAAGCCTGGAAAAGGACGACTGCTGGAACATTCAATACAGCAATCAGCGACTACATACTTGCTTTTTCcaatattaactgtatatttgtgGTAGTAAAGAACACAATCCAAAGCTTCATTGCATCCCTTCTAAGATTGTACCACTACATTGAATGCAGC

Function

GO: NA

KEGG:

id description
K17543 PXK; PX domain-containing protein kinase-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21821 lncRNA upstream 267688 41976395 ~ 41978666 (+) True G17580
TU21741 lncRNA upstream 503581 41742350 ~ 41742773 (+) True G17518
TU21735 lncRNA upstream 529365 41713810 ~ 41716989 (+) True G17514
TU21717 lncRNA upstream 556155 41688010 ~ 41690199 (+) True G17498
TU21710 lncRNA upstream 573001 41671378 ~ 41673353 (+) True G17491
TU22180 lncRNA downstream 785373 43053086 ~ 43112636 (+) True G17882
TU22213 lncRNA downstream 968107 43235820 ~ 43236036 (+) True G17909
TU22284 lncRNA downstream 1126580 43394293 ~ 43394499 (+) True G17969
TU22306 lncRNA downstream 1202357 43470070 ~ 43470846 (+) True G17988
TU22305 lncRNA downstream 1232457 43500170 ~ 43500476 (+) True G17987
AMCG00017031 mRNA upstream 1325 42243601 ~ 42245029 (+) True AMCG00017031
AMCG00017020 mRNA upstream 7067 42222768 ~ 42239287 (+) True AMCG00017020
AMCG00017019 mRNA upstream 32971 42212609 ~ 42213383 (+) True AMCG00017019
AMCG00017021 mRNA upstream 36047 42156679 ~ 42210307 (+) True AMCG00017021
AMCG00017022 mRNA upstream 135658 42110029 ~ 42110696 (+) True AMCG00017022
AMCG00017024 mRNA downstream 1176 42268889 ~ 42275683 (+) True AMCG00017024
AMCG00017033 mRNA downstream 22033 42289746 ~ 42290831 (+) True AMCG00017033
AMCG00017032 mRNA downstream 42340 42310053 ~ 42311207 (+) True AMCG00017032
AMCG00017026 mRNA downstream 84358 42352071 ~ 42376935 (+) True AMCG00017026
AMCG00017027 mRNA downstream 160484 42428197 ~ 42459859 (+) True AMCG00017027
TU21320 other upstream 3742722 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 8145491 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 8198634 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 8573734 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 9388914 32856361 ~ 32857440 (+) True G16289
TU21955 other downstream 123584 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 1858501 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 2386939 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 7135006 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 7445811 49713524 ~ 49721471 (+) False AMCG00017183

Expression Profile