RNA id: AMCG00017026


Basic Information

Item Value
RNA id AMCG00017026
length 4047
RNA type mRNA
GC content 0.48
exon number 11
gene id AMCG00017026
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42352071 ~ 42376935 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGGAGACCCTTGCTACCCAGCTGGATTCTGATTTCTGGACCTATGAATTCATAATGCCGACAGAGGTGCTTTATTTCCagctggcagacagacacaatcTAGAATACCTCATTCTGCAGAAACATGGCTAGCTACAGGGGTAATAATTTACCAAGGTATGGGGAAGTGAGAAAAAGCCTGTTGTGAGCCACAGCCTGTTGGAAAAGTTTCACTTATAGAAGACAAATGGTACTGGATTGACTGGCAAGTAAAACTTCACCTGCAGACACCTTTAGGAAAATATTTGGGAAAGGCCTGTTTTCACACAGACGGCTTAATGGCGCAGTACCTCCACAAACAGCAAGCAGTGGACCTCCCTCAAGAGGATGATTCTGTGTTCCAGACGCATGCCATCAAAGCAACCAGCCAGGATGGCAGGCTGGCTTTTCTCTGTGTGCTACCGATAAAGAATGCCAAGAGTGATGCCAACGAGGTGGTCATGGTGGAGCTCCCTGCCCATGCTAATGTGCACCAACTCAGACTCCAAATCTTCATGCAGGCACAGGAGAAAGGTCCTTACCAAGACCTCAGAGGAATTCTCGACCCAGAGTCCTACCAGCTCCTTTACAGGAAGGGTGAGGACCTGTATGAGATTTATGATGACTATCAGACCCTCAGGGCCTTAGATGTAGTGAGGCACTGGTGCTCACAAGGCATAAAGATGGATAAGATTTTTGTGAAGCCCACATCCAAAGGCACAGAGAAAAGCAAAAGTTTAGAAAAAGACCTAGCCTTCTTGATTGGACAGGACCTCAATGCCGCTGTTGTGGACCGCCTGGATGAGTTGAGCTTTGCCCGCAGGAAATTTGCCTCTCCTCGTAGGGCAGAAATCCGAAACCGTGACCCCAGTGACTATGCCACAGAACCTTGGATTGCTTCAGCTGCCCTTTCAAAAGACCAGCAAGTGACGCTCAACAATGGGCTTCCCATCACTCTTCATTACAAAGGGATTAGTTTCGCAGTCAGAGTAGATGCCAAGAAACCGCCATCTGCTGTAATTGAAATATTCCAGCAGATGATGTGTGATAAAGGTCTCTCTGTGGAGGACACAGCCTCTACCTTGACACTAAAAGTCTGTGGGAGAGAAGAATTCTTAACAGGAGACTGGCCACTGTTGGATTTTCTTTGGGTCCGCCAATGTcttaaaactaaacaagaaatcCATCTGTCTATCTTCTCTCTTTTGTCAATCACATCTGACGAGGTGAGAATGGAGGACTGGCCACTGGTTGATAGCTTCACTGGGCTTTCCAATACTCATGAGGAACTCATGCTAGCCAACAAAGATGTCAATGATATTGTAATGATTTCCCTCTGGGATTGCGATCGGAAATTCAGAGTTAAACTTCTTGGGTTTGACATTCCTCAGCTTCCCAGTAAATCTCCCCAGTACGTCTATGTAGAAGCTTCCATCCTCCATGGGAAGAATGTGATGTCCTCAGTCTGCTCTGAGACCAAAGCTTTTGCAGATGAGGTGCTGTGGAACGTATGGTTAGAGTTTGACATGCAGCTTAAAAGCCTGCCTAGAGCATCAAGATTGGGGTTAACGGTCAATGGTATAACTGCTGAAGCAAACACCATGAAGGATCCCAAACCGCACCCATATGGAGGGAAGATGGCGGACTGTCAAAGGGGCAAGGGCAAGGCATTATACTTTGCAAACCTCTTGCTAATTGACCATAGGTCTCTCCTCAGCCAAGGGCAACACACTCTCCACATGTGGCCCATCCCTGAACAAGTAGAGGAAATGTTCACCTACGAAGCCGATAAGCTGTCCTCCACGACAAACCCGGATTTACCTAACTCCATGGCTATCACTTTCATCTTGGACAGGTACAGTTTTCCTGTTGTCCTACCAGACAGCCGGGCCCGCCCTCCTGCTGCCTTGCTACCGGACTCTCTGTGTCTTAGCAGTGAAGATGTCTCTTCAGGATCTCCAGGGGTGTCAGACAAGGATGTCCTCAGGAGGGTTAAGGAAGAGAGTATGCAGTATGGTTCCAATTTGCCGCAATTCCTCAGCACTATTAACTGGTGTGATCCTGACACTGTACAGGATATCCACTGGCTTCTTCGCAGCTGGAACCCCCAGAACCTGGATATCTCCATTGCTCTGGAGCTGCTCAGTTTTAACTTTGCTGATGACGAAGTCAGAAGGTTGGCAATTAAGAGACTGGAAAAACTGTCAAATGATGAGCTTCTAAAGTACCTGCTTCAGCTGGTACAGagcAAACGAATTGGACACTTCTTCTTCTGGTATGTGCGCAGTGAAATCAGGGGCTCCCCGTATTTCCGGGACCGTTTTGCCGTAATTCTGGAGGCCTACCTGCTGGGCTGTGGCCAGTCCATGCTGGACAGCCTTCTCAAGCAGGTGCAGGTGGTGGACTGCTTGCACAGAGTGGCCACTGACATCAAGAAGATCTTTCCAGAGAAAAGTGATTTGCCCCCAAATGCTGCGTGCACACTACAAGAAATGCTGCAAAACTACTCTCTTCCGCAAGACTTCCAGGTCCCCTATGACCCTCGCATTGTAGCAGGAACGATAATTCTGGAGAACTGTAAGGTGATGGCCTCCAAGAAGAAGCCCCTATGGCTGGAGTTCAGTTGCTGTGTCTCCGAGGGCCCCCCTGGCCCACCAGTGGGCATCATCTTCAAACACGGAGATGACTTACGCCAGGACATGCTGGTCATTCAGAAATCCTTGGATCTGAACCTGGTCCCATATGGATGCATCTCCACTGGATACAATATAGGCATGATTGAGATTGTGAGGGATGCCACGACGATTGCAGCTGTTCAGAGGAGCAAAGGGGGGACAAATGGAGCATTCAAGAATGACGCCCTGCTCGAGTGGCTCAAAGGGAAGTGCAAACTGGAGGAAATGTACTATCAAGCCATGGAGAGATTTGTCACTTCCTGTGCAGGATACTGTGTGGCTACCTATGTACTGGGAATAGGAGATCGCCATAACGACAACATTATGATCACAGAGCAAGGGAACCTCTTTCACATTGATTTTGGCCACATCCTTGGGAACACGAAGCGATTTCTGGGAGTGAACAGGGAGCGAGTGCCCTTTGTCCTGACACCAGACTTCCTGTACATCATGGGCAGAGTCAACAAGAAGTCCAGCCTCTACTTCAAGAGGTTCAAGGAGACGTGTATCCAGGCCTACCTGGAACTGCGCTGTCACTCTGGCCTGCTGATCACCCTCTTCTCCCTCATGACACTCACGGGCATCCCTGAGCTCAGCTGCTCCGAGGACATCCTCTACCTGAAGGAGGCCCTGCAGGTGGAGCGGGACGAGGGCTCCGCTCGGGAGCACTTCCTCCAGCAGATCAACATCTGCGAGCAGCTGGGCTGGACGGTCCAGGCCAACTGGTGGATTCACCTGCTGGTCGGCATCAAACAGACCTGAGGGGCTGGAGTCTCTCCCTTAGGGCAAGCAGCAGCACCACGGGCTTGTATGTACCTTGTTCCTCAGCCAGGCAACACTGTCTGTAGTGTTTGTAGTGGGTCTGTGATGGGCAGCCCTTCCAAACCCTTGCACTGTTGGACAGGGCCAAAACCTTTCCTTTATAATAACCAGTCAGGTTATTGGCAGGGATTGGCATTGTGTCcgtgttaaaacaaaatcaggtccattactaatttattcaaaataacgTACGACTTACAGGCTGTtgagaaatatacattttacctATGAAACCTAATTTTGCAATTGCTACGTTAGCTACGTTCACATTgtgaacgtttttttttttattattagttagcgctgctgcctcatgGGTCCTGGGTTTGATTCAAAGCTGgggggtctgtctgtgtgtagttTGCACATTTTCCCCATCTCTGCAtgcctttaaattaaatacacacttCGTGTACAGGCTAATTTTCCCCCAAGCcatgtgtaattaatttaaaactaattattaattaaactttaattgcatgtttttttatattatttgtttatgcaaGTTGGTACATTTATATGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21821 lncRNA upstream 373405 41976395 ~ 41978666 (+) True G17580
TU21741 lncRNA upstream 609298 41742350 ~ 41742773 (+) True G17518
TU21735 lncRNA upstream 635082 41713810 ~ 41716989 (+) True G17514
TU21717 lncRNA upstream 661872 41688010 ~ 41690199 (+) True G17498
TU21710 lncRNA upstream 678718 41671378 ~ 41673353 (+) True G17491
TU22180 lncRNA downstream 676151 43053086 ~ 43112636 (+) True G17882
TU22213 lncRNA downstream 858885 43235820 ~ 43236036 (+) True G17909
TU22284 lncRNA downstream 1017358 43394293 ~ 43394499 (+) True G17969
TU22306 lncRNA downstream 1093135 43470070 ~ 43470846 (+) True G17988
TU22305 lncRNA downstream 1123235 43500170 ~ 43500476 (+) True G17987
AMCG00017032 mRNA upstream 40864 42310053 ~ 42311207 (+) True AMCG00017032
AMCG00017033 mRNA upstream 61240 42289746 ~ 42290831 (+) True AMCG00017033
AMCG00017024 mRNA upstream 76388 42268889 ~ 42275683 (+) True AMCG00017024
AMCG00017025 mRNA upstream 84358 42246354 ~ 42267713 (+) True AMCG00017025
AMCG00017031 mRNA upstream 107042 42243601 ~ 42245029 (+) True AMCG00017031
AMCG00017027 mRNA downstream 51262 42428197 ~ 42459859 (+) True AMCG00017027
AMCG00017029 mRNA downstream 100816 42477751 ~ 42509628 (+) True AMCG00017029
AMCG00017028 mRNA downstream 138491 42515426 ~ 42551765 (+) True AMCG00017028
AMCG00017023 mRNA downstream 176284 42553219 ~ 42561656 (+) True AMCG00017023
AMCG00017037 mRNA downstream 205417 42582352 ~ 42594094 (+) True AMCG00017037
TU21320 other upstream 3848439 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 8251208 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 8304351 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 8679451 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 9494631 32856361 ~ 32857440 (+) True G16289
TU21955 other downstream 14362 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 1749279 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 2277717 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 7025784 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 7336589 49713524 ~ 49721471 (+) False AMCG00017183

Expression Profile