RNA id: AMCG00017027


Basic Information

Item Value
RNA id AMCG00017027
length 7287
RNA type mRNA
GC content 0.51
exon number 33
gene id AMCG00017027
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42428197 ~ 42459859 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTGGGAATAACTCCCTCCTCCCCCAATTATTCTCTGCAGCTCTCAGTGTAGTGGCACAGGAGCAGCCATCCGGACCTCACGGATGTACAGAGGGAAGCTGTTACCCAGCAACTGGCAACCTCCTAATTGGCCGAGCTAAAGACCTGACCGCTACCTCCACCTGTGGCCTGCAGATCCCAGAGAACTTCTGCATCGTCAGCCACCTGCAGGAATTGGACAAGTGTTTCCAGTGTGACTCGCGGAGGCCATACGATCCCATCTGGGAGAAGAACAGCCATCGTGTGGAGAATGTCATCTACCTAATGGACCAGAATGGAGAGTACACCTGGTGGCAGTCCGCCAATGGTGAAGAGAATGTCAGCATCCGTCTGAACCTGGAGGCGGAGTTTCACTTCACTCACCTCATCATGAAGTTTAAGACCTTCCGTCCGGCAGCCATGCTGATCGAGAGGTCCGCGGATTTTGGGCGCACGTGGAAACCCTACCGCTACTTCTCCTACAACTGCACCAAAATGTTCCCCGGTGTGCCAGCCCGGGCCTTGCAAAGGATTGACGACATCATCTGTGAGGAGCGGTACTCTGACATTGAGCCCTCCACCAAGGGCGAGgtcatttttaaagtgcttGACCCAGCTATTTTTGTCAGTGACCCTTACAGCCTGGAAATACaagAGCTTCTTCGCATCACCAATCTCCGAATCAACTTCACCAAGCTACACACACTGGGGGACAACCTGCTGGACCGACGGACCGAGGTGCTGGAGAAGTACTACTACTCTCTGTTCGAGCTGGTGGTGCGGGGCAGCTGCTTCTGCTACGGCCACGCTTCGGAGTGCGCGCCTATCCCAGGGATCAGCCGCTCGGAGCCGGGCATGATCCATGGCAGGTGTGTTTGCAAGCACAACACAGAGGGCTTGAACTGCGAGAGCTGTAAAGACTTTTTCAATGACCTTCCCTGGAGGCCGGCCGAGGCGGACAACCCACATACCTGTAAAGGTAATGGCCAATGTGAAATCACCAGTGAGGAATGCAGATGCAATGGCCATTCCAGTAGGTGTCACTTCGACATGGCAGTGTACCTGGCCACGGGGAATGCAAGTGGGGGCGTTTGTGACGACTGTCTGCACAACACCATGGGCCGAAACTGCGAGCTGTGCAAACCCTTCTACTACCAGGATCCAGTGCGTGACATCAGAGACCCGGCTGCCTGCGTTCCATGTGACTGTGACCCAGTGGGCTCTCTGGATGGCGGAGTGTGTGACAGCCACACAGACCTGGACATGGGCATGATAGCTGGGCAGTGCCACTGCAAGCAGAATGTCAAGGGTACCCGCTGTGACTGCTGCAAGGAGAGCTTCTATGGGCTCAGCAAGAATGACCCCCTGGGCTGCCAGCCATGCAGCTGTGATCCTCGTGGGATTATCATGGCAGCAGCACCATGTGACCAAATCAGCGGGGACTGCTCTTGTAAGAGATACGTCACTGGCCGCTACTGCAACCAATGCCTGCCAGAGTACTGGGGGCTCAGTAATGACATTGCAGGCTGCAGGCCCTGTGACTGTGATTTTGGTGGAGCTTATAGTAACAGGTGTGTCATGGAGAACGGGCAATGTGACTGTCGGCCGCACATCATTGGGCGGCAGTGTGCAGAAGTGCAGCCTGGGTACTTCTGTGCCCCTCTGGATTTCTACACATATGAAGGGGAGGATGCCGTGCCACATTCGCCTGAAGACCCTGACCTTCCTGGAAGGCCCCGACCCAAGGCTGAGGTCGACTGTGTGGAGCACCTAAACAACCAGCTGAGGAGGCACCGCCGCCACCGTCGGATTGCCAGCGCCCAGCAGCAGAGGGCAGCACTGAGGAGGATCCGCCAGCTACAGCAGACGCCTGATGTGAAGACCGTGCACAGGGAGAGGGCTCCCGGGCAGATGGTGACGTGGACAGGCCCCGGCTTTGCAAGGGTGAAGGACGGAGCAGGCCTGGTGTTCACCGTTGGCAACATCCCATTCGCAATGGACTATGACATCATGATCCGATACGAGCCAGAGTCAACAGAAGACTGGGAAGCCATTGTTAGCATTACGTCTCTGGTATTGCCCACAAGTCCCCGCTGTGGGAACGTGCTGCCCTCTGAGCAGATGTACACAGTGACGCTCCCTCACCAAACAAGGTACATAAAGATGCCCAGGCCATTCTGCTTTGAACCCAACAACCGTTATGTTGTAGCTATCCGCTTCCAGCGCTATGGAGTCTCTCACCGACACCTGACTGCATTCATACTAATCGATTCTCTGGTGCTGATTCCACAGTATACAGAGCTGCCCGGTTTCCTCGGCAATGACCCCGTGTCGGTGCACCACCGCAAGGAGATGGAGCACTACATGTGTTTGGACTCCTTCATGATGGTGCCCATGCCCATGTTGGCGGAGATGTGCGTCAAACTCATCTGCAGCATATCTGCTATCATGCACGACGGCGCACTGCCCTGTCAGTGTGACCCCCAGGGCTCTCTCAGCACGGTGTGTGACAAGGTGGGGGGTTACTGCCAATGTAAGTCCAACGTGGTTGGCCAGCACTGTGACCACTGTGCTCCTGGAACATATGGCTTTGGACCTTACGGCTGCAGTGCCTGTGACTGTCACTCTCAGGGCTCAGTCAGTAACCTGTGTGACCCTGTCTCGGGCCAGTGCCAGTGTCAGCATGGGGCCACCGGTCGCCAGTGTGCCAATTGCCAGCCAGGGCAGTGGGGCTTTCCCAGCTGCCGGCCATGCCAGTGTAACGGGCACTCAGAGACCTGTGACCCCCAGACAGGAGCCTGTGACAGCTGTAGGGACTACACGGCCGGGGCACTCTGTGAGAGGTGCATGAATGGTTTCTATGGAAACCCTGTTTTGGGGTCCGGAGAACACTGTCGCCCTTGCCCTTGCCCTGGAAACCCAGGAAGTGATCACTCCAATGGGGACTCCTGTTACTCTGATCCTGTGTCCAATCAGATCATCTGCCACTGCAGAACAGGATATACAGGCCCTCGCTGTGACCACTGCGCCCCTGGTTATTTCGGTGACCCAGTGCGAGCTGGTGGAGAGTGCAGGCCTTGCCAGTGCAACAACAACATTGATACCCTGGACCCTGGGTCATGTGACCCACAGACCGGCCAGTGTCTGAACTGTCTCTACAACACTGATGGGCCGACGTGTGCGGAGTGTAAGCCTGGATACTATGGCAACGCCCTCGTTCAGGACTGCAGGCGGTGCACCTGTGTGACTGCGGGCACCCTGTCATCTCTCTGCACCGCAGAGGTGTGTCACTGTGACAAGAACACAGGAGCCTGCCCGTGCCGTGCCCACGTCATCGGGCAGAACTGTGACCGGTGTGCACCTCTGCACTGGAACTTCGGCCGGGAGCCAGGCTGTGAGCCATGCAGCTGCCACCCCCAACACGGCATTGGTGAAGACTGCAACATGATTTCTGGACAGTGTCGCTGCCGGCCAGGCTTTGGGGGCAGAGTGTGCTCAGAGTGCCAGGAGACCTACTGGGGTGACCCAAGCACAGAATGTAAAGAGTGTAACTGTGACCCGTTCGGCTCAGAAACGCCCCAGTGTGACCGGGAGACTGGGCACTGTGTGTGTAAGGAGGGAGCGATGGGCCAGCAGTGCAATCAGTGTGCCCGGGGCTTCTCTGGGAACTTCCCTAAGTGTGTGCCCTGCCACCCCTGCTTCGACCAGTGGGATGATGTAGTGTGCCGCCTGCGACGAGAGCTGGACACGGTCCAGATGCAGGTGAAGAAGATCCAGATGGCAGGGCTCCCCTCTGACTTTAACGACACGCGCATCCAGGACCTGGAGAAAAAGCTGGCTGACATTCAGAGCCTCATCAACGGCAGTTCCAGCCTGAGGATCTTCTCACTGCTGAGCCAGAACGCCGATGACCTGAGGACGGAGATCACTTTGACAGACGGGAGGCTGATGGAGTTAGAGGGCGACCTGAACAGCACGATGCGGAGAGATGGGAAGCTGCAGGACAACCTGGACATACTGGAGGCGGAGCTCCGGGACCTCAACAACACTGTGGCTGAGCGTCGCCGTCAACTAGGAAACATCATCAGCGCAGGCCTCAGCGATGCATATAACAATATCACTAAGTCCTACATGGAGTTCCTGGATGCAGACAGGAGATGCAATGCCTCGGTGTCCGGTGCTAACAGTCCAGTGGTGCAGTCCAAGGAAACTGTGCAAAAGACAGAGGACCTTCTGAAGGATAGGGAGGACAAGTTCCAACGCACCATGGCAGCTCAGAAGAAATCACTGAAAGAGCTGCAGAACAAATCCAGAGATATGGACAAGAAGATCCACCACCTGAGCCAGAAGGAGGGCAACTGCGCAGACAGTCCATGTGGGGGAGCTGGTTGCCGTGATGAGCAGGGGCAGCTGCAGTGTGGGGGGGCGGGCTGTAACGGGACAGTTGGGACCTCCATGAGAGCTCTGCAGCTGGCCAATGATGTTGCTGCCAACATTTCAGCTGCCAATGAGGAGCTGCAGAACGTCGCACAGAAGCTAAAGGACATTAAGATGCTGACGCAGGATGTGAAAAGCCAGGCACAGGGGGCTTTGAAGAAAGCTCTGAAGAATAAAGAGGTTTTTGCAAACACCAATCAGCAGCTCAAAGACTTCATCCAGAAGATCAGAGACTTCTTAATGGAGGATGGCGCTGATGCCGAGAGCATCGAGAAGGTGGCCCAGCAGGTGCTGGCTATCTCCCTGCCCGTCAATGGTAGCATGTTGGCCCGCCTGGTGCAGGAGATCCAGGACAGCATCGCCGACCTCACCAATGTGGAGAGCGTCTTCAACAGCACCTCCCAGCAGCTCCGCATCGCTGAAGAGCTCCTGAAGGATGCTGTCAGCGCCAAGGCCCGAGCAGAAGCAGTGAAGGACACTGTAGATGAGACGAAGACCGCTCTTAATAACGCCCAGCAGGCGGCAGACACTGCAGAGAAAGCCCTGAAGAAGGCCCAGAAGAACATCAACGGCGTGGGCGACACCACTGCCATGGTGGAGGAAAAGCTGCAACTCATCGAGGACAAACAGATGGATGCCATGATGCGACTGGCCAACCTGTCGGCAGAGGTGGAGTCTGTGCGGCGGAAGACGGAGCTGAACAGGGTCATGGCACAGGAAGCCAAGGCTCAGTCGGAGAACGCCACCCGCGCGGCACGAGGCCTGGACCAGGTCTGCCGCTGCTCCTGGTCAGTGTGTCGATATCTCGAAAAGCGGTTTGTGAACAATGAGAAGCGAATGCAGGAGCAGAGGGACGAGCTGGCGGACCTGGAAAAGAATGTCACTGACATCAGAGAAATTATACGTAACAATGTGACACAGTACAACACCTGCACGTGATAAGTTGCTCCTCAATTCTCACACTTTATTAGACCCCAAGCACtgactgttttttaaaatagatGCTCCTGTTTCCAAAGCTGTAACTGATCAGGTTTTAGAGGAGTTTTtcctcttgtttttgtgttgttgttgctgcttttttgggtgtgtgtggggtgggggggcattttcTAGAAGTCTGCGGAGATCctttcagtatttattaaacCATTCAAGATTGCACATCTTGAGCCTAGATGAAACCTTTATGCctataaataaagtgaacagcCCACTCCTGCTCTCCAGAAGCCATTCAAATCAATAAGGAATTGTagcttctgctctctgtccccAGAAATCTGTAGATTGGATTCATATTGTGGGCTTTGCAAGATCAATGTTTTCTCCTTTGTCCTATAATGGCATATTTTTATACAGAGCTAATTATTACTTGTGTATCTCACTTATATAAAAAAGGCACAACTTGTAATTAGGGGTCCAAAAGTATACAAACTGTTTTCTTCCCTTCAAAACATATTGTTGATTATTGAATTCTGCTGACTAGCGTGTTCTATTAAGTAATATCAAAGATGAGGATGGAAAATTATAGGTAATAGGGGCTTGTGTGAAGTTAATGGTCAAATCAATCTAGTTGTACTTCAATAAATGTTCAAAATAGAACAATGCCAAGTGTTGCTATGGCGTAccatagttatttttaaaagatccCTTGATACTTCtatgaaaaatagaaaataagttTGTATGTTATTGGTTTCACATTAATACATAAGAAGAAATAAGTgtttaaacatataaaacaaatagtctaAATTATCcagtttaatcaaattaatccaGGTATTTGTAACTTGATTATTTTTCAGTAGTAGTAAGCCTGTTCTCAGAccagatgtatatatttttaaaatattgtcagACAGGATTGTGAGACTCAGCTATTACAATCTGCAACTAATAGTGGTTCCTATTTTTATTGAGGGCCTTTCTGCAATAACTGACTTTCATAATTGCTTCTGCTCATTCCAACAACAGGCAAAGAAAAGGCTTGGCTTATTTAACATGTAATACATGTTTCTATGTGGGTATCTGGTCTCTCAATAAATCCTGCTCAACATGATGGACTGCCCTGGCGACTGTGAAGTCCGTGTCGTCATTTTGTTCACAAGGAAGCTCAACTGTAATAATATCAGGAAGTTCTGCAGGGCTGATTAACATACCCAAGTATATCTGAACCCTCATACCTATTTGATTAACGTTTGCcttatgaaaaatgtaagcCGCGCTAGCCACATATGTTAAATCGCAGTACTGTAATTCAATTAACCAATATTACAAGCCTTAATAGAGTATTATGATATCCTTATGGTGCTAAATGAACCATGCAGTACCTGGTCcatgcagtttaaaaatgttttttccactCTCATACAAACCATGTGCTGTTAGGCTGAAGATAATGCTAGTGTTCTGGTACTGGGATAGAGAGTCAGTTCACACTCAGAGATTCGGGACACCTAACTCCTATGGAGCAAAACAACGGACAAGTTAAGCTTATATTTTGGAGAATGGGTCATAATAGGAAGGTCAGATACTTAAATTTTCTCCTGATAAACATGGGATCAGACTGTGTAAGCCTTGTGGCAGATAAACCGGACAGGACTTTAGTTTGCATTGTTATCCAAAGAACCCCTCACTGAAGAGCTCTTGTTAAGAGATGTGAAAGGACATAGGCTGAGACAGACTCGGAGACAGGAAGGCTCTGTattaagataaaatataaataccaacacaaaacaatcttGCTTTTTAATCTTGTTATATGTATCCATTGCATAAACACATTGTATCTCTATTTGTCTGTTATTTACAGATACACCTGTGgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21821 lncRNA upstream 449531 41976395 ~ 41978666 (+) True G17580
TU21741 lncRNA upstream 685424 41742350 ~ 41742773 (+) True G17518
TU21735 lncRNA upstream 711208 41713810 ~ 41716989 (+) True G17514
TU21717 lncRNA upstream 737998 41688010 ~ 41690199 (+) True G17498
TU21710 lncRNA upstream 754844 41671378 ~ 41673353 (+) True G17491
TU22180 lncRNA downstream 593227 43053086 ~ 43112636 (+) True G17882
TU22213 lncRNA downstream 775961 43235820 ~ 43236036 (+) True G17909
TU22284 lncRNA downstream 934434 43394293 ~ 43394499 (+) True G17969
TU22306 lncRNA downstream 1010211 43470070 ~ 43470846 (+) True G17988
TU22305 lncRNA downstream 1040311 43500170 ~ 43500476 (+) True G17987
AMCG00017026 mRNA upstream 51262 42352071 ~ 42376935 (+) True AMCG00017026
AMCG00017032 mRNA upstream 116990 42310053 ~ 42311207 (+) True AMCG00017032
AMCG00017033 mRNA upstream 137366 42289746 ~ 42290831 (+) True AMCG00017033
AMCG00017024 mRNA upstream 152514 42268889 ~ 42275683 (+) True AMCG00017024
AMCG00017025 mRNA upstream 160484 42246354 ~ 42267713 (+) True AMCG00017025
AMCG00017029 mRNA downstream 17892 42477751 ~ 42509628 (+) True AMCG00017029
AMCG00017028 mRNA downstream 55567 42515426 ~ 42551765 (+) True AMCG00017028
AMCG00017023 mRNA downstream 93360 42553219 ~ 42561656 (+) True AMCG00017023
AMCG00017037 mRNA downstream 122493 42582352 ~ 42594094 (+) True AMCG00017037
AMCG00017035 mRNA downstream 164130 42623989 ~ 42630671 (+) True AMCG00017035
TU21955 other upstream 30410 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 3924565 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 8327334 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 8380477 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 8755577 33668629 ~ 33672620 (+) True AMCG00016901
TU22431 other downstream 1666355 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 2194793 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 6942860 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 7253665 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 8092021 50551880 ~ 50552985 (+) True G19113

Expression Profile