RNA id: AMCG00017032



Basic Information


Item Value
RNA id AMCG00017032
length 1155
RNA type mRNA
GC content 0.49
exon number 1
gene id AMCG00017032
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42310053 ~ 42311207 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAATAGTAAGGACGATACTGTGGAGAAGAAGGCAGTCCATTCTTGGTCCAGAATTGCTTCCGCTGGGCAGACCGCACTTGTGGAAGCCTTGAGAGTGTTCAGCCCCATGTCCAAGGACCTTCAGGATACTGAGACGCAGCTTGTGTCTTTTCTACAGGGACTCAAAGAAGAGGGTCATACGGCCACTGTTCTGAAGAGCAAGGACGTGTATGGTTACGAGTCTTGCACAGCAGAAATGCCATCACCGGACAAGATGTCCAGACCATTGAATATTGCCCCCAAGGTAACTAAAGTGTTAAAGCCTGTTAAGAAAAGAGGAAGGAAAACAGTcgtgaagaaaaaggaaatcaatTATGCTTTGTTAAGTGCCGCAGCTAAGATCGTATTCAAGAAGCAGCCTAAGATACTTTTGACTAACCTTTCCCAGGAGTCTCTGAAGCGAACAGTAGCAGTGCTTTCGAAGTCACCTGCTTCGAGTGCACATGCGCTGAGTTCTACCAGGACTCAGCCGTGCCTGAAATTGTCAAAAATAACAGAACCCTCAGGGAGCCATACAGCCAGACTGCAAATCCATTCAGAGTTGGGGTCACTGGGGATTTCGGTGCCCAGTTCACACCAGGCCCCAAAACCCTCAGGGATGCCAGCACAGCCTTTGGATATCCCTGGGAAAACCCCCAAGGGCCTGCCCTTGGAGAGCGTAAGAGTCAGTTCCTGCCCACTGAAAATGACCGTAGCGCTAGTGGGTGGCTCTGCACCGGTTGCATGTCAGAATGGCCGGGTGTTGAAGGAAAGCAACAACTATAAAATGGTTCCTGTCAGGATTGGTAAAACCAGCTCACCGAATGATAGACTGGGCTGGAATGACAAAGCGGCTGTCAGGGTGCTGAACTGCCAGCAGGAGCTGGATGTGCGGAAAAGGAAAAGACTGGAGGAAACTGAGGAGACAACACTGAGGAAAAGACCTAAAAATGGCTCCTGGGTGTGGAAAGGCCAGGATGACTCTGGCCTGAATGAGAACAATCTGCGGTTCAAGGTGATCAAGGTGGACGATTCAATTACGGACGAGGAAGTGAGGCGAAAAGCCCAGAAGATCTTGCGGGTGAACCTTTCCCCAGTTATTGAAATCCGACCTCTTATAGCTTATCCTGTTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21821 lncRNA upstream 331387 41976395 ~ 41978666 (+) True G17580
TU21741 lncRNA upstream 567280 41742350 ~ 41742773 (+) True G17518
TU21735 lncRNA upstream 593064 41713810 ~ 41716989 (+) True G17514
TU21717 lncRNA upstream 619854 41688010 ~ 41690199 (+) True G17498
TU21710 lncRNA upstream 636700 41671378 ~ 41673353 (+) True G17491
TU22180 lncRNA downstream 741879 43053086 ~ 43112636 (+) True G17882
TU22213 lncRNA downstream 924613 43235820 ~ 43236036 (+) True G17909
TU22284 lncRNA downstream 1083086 43394293 ~ 43394499 (+) True G17969
TU22306 lncRNA downstream 1158863 43470070 ~ 43470846 (+) True G17988
TU22305 lncRNA downstream 1188963 43500170 ~ 43500476 (+) True G17987
AMCG00017033 mRNA upstream 19222 42289746 ~ 42290831 (+) True AMCG00017033
AMCG00017024 mRNA upstream 34370 42268889 ~ 42275683 (+) True AMCG00017024
AMCG00017025 mRNA upstream 42340 42246354 ~ 42267713 (+) True AMCG00017025
AMCG00017031 mRNA upstream 65024 42243601 ~ 42245029 (+) True AMCG00017031
AMCG00017020 mRNA upstream 70766 42222768 ~ 42239287 (+) True AMCG00017020
AMCG00017026 mRNA downstream 40864 42352071 ~ 42376935 (+) True AMCG00017026
AMCG00017027 mRNA downstream 116990 42428197 ~ 42459859 (+) True AMCG00017027
AMCG00017029 mRNA downstream 166544 42477751 ~ 42509628 (+) True AMCG00017029
AMCG00017028 mRNA downstream 204219 42515426 ~ 42551765 (+) True AMCG00017028
AMCG00017023 mRNA downstream 242012 42553219 ~ 42561656 (+) True AMCG00017023
TU21320 other upstream 3806421 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 8209190 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 8262333 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 8637433 33668629 ~ 33672620 (+) True AMCG00016901
TU20240 other upstream 9452613 32856361 ~ 32857440 (+) True G16289
TU21955 other downstream 80090 42391297 ~ 42397787 (+) True G17697
TU22431 other downstream 1815007 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 2343445 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 7091512 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 7402317 49713524 ~ 49721471 (+) False AMCG00017183

Expression Profile