RNA id: AMCG00017042



Basic Information


Item Value
RNA id AMCG00017042
length 1219
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00017042
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42850719 ~ 42852294 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGGAGGCAGTTGCTGTTTCTGGTCTGTTTAGCGTTTTTAAGGTTGTGTTAGGAAAGCAAGAACGGAGAACAGAGGAAAGAGGATGCCTCCCAAAAAGACTACTGTCGTCGCTGCCTCCGCTCCTGAGCCCGAGTCCAGTGCGTCTTcagcggaggaggaggaggaggaggaggaagatggagatgaagatgaagatgaagatgaaggagatgaaaaggaggaagaaggagagCCCGAGCCCGAGACCGCCACCGAGCCCGACACGGAGGAGACCGTGGAGAAAAAGGGCAAGCTGGCCGCGGTGCGCAAAACGACAACTCATCCGGCAACTATGGAGATGATAACCGAGGCGCTGCGCCAACTGGACACCAAGAAGGGCACCTCTGTCCAGGCCATCCGCACGTACATCCTGGAGAAGTACCCGACGGTGGACCCGGCGCGGCTGAAGCCTCTGCTGCGGAGCGCTCTGAACAAAGGCATCGAGAAGGGCACCCTGGTGCGGCCCGGCAACTCGAGTGCGACCGGGGCGCAGGGCCGATTCCGGCTGGCAGTGAAGACGGTCATTAAGAAAACCAAGGAAGCGAAACTGAAAGGCGGCGAGAACGCGGATCCAAACGTGGAGGAGGCGCCGAAAGCCGGGCCCAAGAAAGGCAAGGCCAAGGAGCCGGTGTCCGAGAAGGTGAAACCTGCTGTGAAGGTTAAGGAGAAGAAATCTGAGGAATCCAAGCCTGTTAAAAAAGCACCGGTGGAGAAAAGTAAATCAAAAGTGGCTCCAGCGAAGAGGCCAAAGGCTGCCAAGAAAGGCCTGAGTGCAGAAGAGGAGGCCGAGGTGGTGAAGGAGCCGAAGGCCCAGAAGAAAGTGGCCAAGCAGAAGCCCGCGGCGAAAGAGGCCAAGGTGGACGGGGCAGCGACTAAGCCCAAACGGGGGAGGAAAGGGGCGGTGGAGTAGCGGGTTTATTTTAGTGGACTGTTTTATGATGTGCACTTGTGAATTTGAATAAAGATTTGAACTTTACTTGTTTGGGTGAGTGAGGTGTTGCTGAGATGAGCAAGTGTGGTATTTGTGGTGGGTCTAGGTGTTTGTAATGGTGTGATGTGCACAATGCATGTGCTAGTTGGGTGTGAAGTGCTTAAGTGTGTGATGTAGCATGTGCAACCCCCCTGCACAAACCCAGCGTTCTCTATCTGAATCTGTGGgatgggactttttttttttttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21821 lncRNA upstream 872053 41976395 ~ 41978666 (+) True G17580
TU21741 lncRNA upstream 1107946 41742350 ~ 41742773 (+) True G17518
TU21735 lncRNA upstream 1133730 41713810 ~ 41716989 (+) True G17514
TU21717 lncRNA upstream 1160520 41688010 ~ 41690199 (+) True G17498
TU21710 lncRNA upstream 1177366 41671378 ~ 41673353 (+) True G17491
TU22180 lncRNA downstream 200792 43053086 ~ 43112636 (+) True G17882
TU22213 lncRNA downstream 383526 43235820 ~ 43236036 (+) True G17909
TU22284 lncRNA downstream 541999 43394293 ~ 43394499 (+) True G17969
TU22306 lncRNA downstream 617776 43470070 ~ 43470846 (+) True G17988
TU22305 lncRNA downstream 647876 43500170 ~ 43500476 (+) True G17987
AMCG00017045 mRNA upstream 1053 42845705 ~ 42849666 (+) True AMCG00017045
AMCG00017046 mRNA upstream 6408 42820792 ~ 42844311 (+) True AMCG00017046
AMCG00017044 mRNA upstream 41017 42796198 ~ 42809702 (+) True AMCG00017044
AMCG00017043 mRNA upstream 57371 42758813 ~ 42793348 (+) True AMCG00017043
AMCG00017039 mRNA upstream 125497 42722477 ~ 42725222 (+) True AMCG00017039
AMCG00017053 mRNA downstream 243344 43095638 ~ 43097515 (+) True AMCG00017053
AMCG00017054 mRNA downstream 265924 43118218 ~ 43124403 (+) True AMCG00017054
AMCG00017056 mRNA downstream 456401 43308695 ~ 43314951 (+) True AMCG00017056
AMCG00017055 mRNA downstream 465396 43317690 ~ 43319313 (+) True AMCG00017055
AMCG00017066 mRNA downstream 513533 43365827 ~ 43369383 (+) True AMCG00017066
TU21955 other upstream 452932 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 4347087 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 8749856 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 8802999 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 9178099 33668629 ~ 33672620 (+) True AMCG00016901
TU22431 other downstream 1273920 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 1802358 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 6550425 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 6861230 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 7699586 50551880 ~ 50552985 (+) True G19113

Expression Profile