RNA id: AMCG00017043


Basic Information

Item Value
RNA id AMCG00017043
length 4618
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00017043
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42758813 ~ 42793348 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCTGCTCTTCATTGTGCACGGGGCGGGGGAACACTGTGGCGGCTACAGCGACCTGGCCCAGATGCTGGCTGAACACtccctgctggtttttgcaCACGACCACCTGGGCCACGGGCAGAGCGAGGGGGACCGCATGGTGATCTCAGACTTCCACATCTTCATCCGGGACTCCCTGCAGCACATCGACCTGATGAGGAGCCGACACCCTGGCCTGCCTGTCTTCGTCGTGGGCCATTCCATGGGAGGAGCCATTTCCATCCTCACAGTGTGCGAGAGACCAAATGACTTTGCTGGGGTGGTTCTCATCGCGCCCATGGTCCAGATGAACCCCGAATCCGCCACCCCTTTTAAGGTATTCATGGCCAAGCTGCTAAACCACCTGGTGCCAAGTATGTCCTTAGGGGCAATTGATTCCAAATGGATCTCCCGCGACCAGAAAGAGGTCCAGGCCTACGATGCCGATGTTCTGAATTACCACGGGGGCCTGCGCATCTCCTTCGGCATGCAGCTCATGAATGCCGCCACCAAGATCGAGAAAGCTCTGCCCGGGATCAGCTGGCCCTTCCTGCTTCTCCACGGAGACAACGACAAGCTGTGCGACATCAAGGGCTCCCAGATGATGCATGAAAAGGCACAGAGTCAGGATAAGAAACTCAAGGTGTACAGCGGGGCCTATCACGCCCTGCACCACGAGCTCCCAGACACGACCAGCTCCGTCCTCAAAGAGATTAGCACTTGGATTGTCCAGAGACTCCCGGAAGAAGATTAAACGCAGTTGTGGAGGCGCAGCCAACTCACTTCAGCTTGTTTGCTTCAGGCTGATCTTGGCCTGTGTTTAATCAGCACGGTTTCTTTGCAGTAATGATATACCgtgttaaataatgaaaaaataaaaaaacaccaacaacagcCCCACCAACAACAAAACCGTGCTGTTAAAGCCACTTCTCAAACCAGGCTTACACAAGCAAGTGATAAAATCAGCCACCAACCACAGCGATTACTGCCTACAGCATCCTACAAACCCTCATTCTTTCTAACCAGCATCTTAATcagacattttcaaagcaggtgaattaatgtattcatttgtacTGTGGGGGTGTGGGTCATCTTGGGTTTGAAATATTACATCATACTAGGGGTATTTCTCTGTTTAGTTATGTGGGAATGGTTAAGCAAGAGTAACCAGTGAGTATGCACTTCTATGACATGGAAAGCTCTTTTTTATGGCTCCTGATTGTGGCCATAAAGCGGTGGAGTTCTTCAGGGAGGGATTTCTGAACAACTCTGGGTGATTATTACATACAAAGGGGTAAAAGTGCCTGTGAATTTCTTTGCtatattgtttctgttacaGGCATGTTCACCAGGAAGAGAAGATCAATTACActaacataaatatatgttatatCCATTTATATGTCACTCATTTAAAAACGTTCTGTTTTCACAGGTTTGGGAGACTTTAGAAACTTGAATTACATAATCAAGCAGCTACTGATGTGTCATTTactgggaagaaaaacacagcactgtacTTTAACTGCATAATCCCACAATGCAAAGTGCATGGCTTCTCTGCTTGAGTCACTGCTTTGCTGAAATCTATGAATTTCAGTTTGCAAAAGTTGCAATTGagttattttgtctttgtttcattttggcGCATGCCTTCTAATGCACTGTTCTATTGTTTGTTAATATGCTACTCCCccatgaaatatgaatataaacaatATCTTATTGTGATGATGAAAAAAAACGCATCCTTAATCCTCTGAGGGTGGGAGGGGGATGCAAGCCCTTGCTGGCCATTTtaagaattatacattttcctaacatctagattagaaaaagattgggaaaatgtactgttttttttttttttttgtcgttttAGTAGTGTAAATAGTCTGGATTTGGTTAGTACTGTTAAGCGCATGTAGTCACAGTGGCCTCGCTTCATAGTAGAAGAAACAGAAATTACCAAAAAGATTCCTATTGTAGAAATAATGCACATCATTCAGCAATCGTGTGCACTTATACACTGTCACTGTAAGTTTAAGCCCAGTTATTGGTCAAAACCCAAAGTAAACCGTGTTGGGTTAACGGCACTGATGAGAGTGGTACTCAACACACCACGGTCCCTTCCCCTTTTCCAGAATGTGATTTCTTCATGAATAGGACCATTTGAATGTGAAGCTTTGCTGATACCCAGCAGGACCCAATATTGCTCAACATCATCCCATATACAAAATCCCTGCAGTACGTGCTCTCAAAGGAGTTTACCATCACCAATGTTATTTCAGCTATTTCTGCTTGTCCTGTGCTTCAAAGTGGATGAGAACATTCAAATCTTTTGGCTGGGCTTAAACTAACATACTCCCCCACTTCACTTGCTGCCTTTGGGGAATTTAGATCTTTTCTATTTAAAGCCCTTTGCTTTTTCAGCTTTGCCGGATGGAAATGTGCTTCTTTCTTGTGTACTCCCCTACCATCAGTCTAGAGATGTCAGTTCACGAGATCCATTTATTGGAGTATATCATTATGACAGATTCTATTAAAGCGAGAAAGCGTGATAGGGAGTCACAGCGGACCTATTTAATAGGACAcagaacaaacaagaaaacgCACCAGCTGGAAAGCACATAGAAGACTTAGCACTTTTCAGTAGGGCAGGGCAGATTTGGGATCAACCCTTAAAGTGTGATAGCTTTTATTACTAGGAACGGAAACTCACGTTCAAAACCAGTAGTGGGCAACTGTGTTCTCAGATGGCCGCAGTCCCAATTAAACCGATTAAAATTCTTCACGTTCTTTTAATTTGGTTCGAATAGGCTGCTGAGCTCTCAGCTGGAACGTAACCTCCAAGTGGCCCTCCAAGACCAAAGCTGTCATCACTGTTTTGAATAGAGTTTTAAACTAAACGTTTGGAGCAGGACAACCACAATCTCATGCCTGACAGCGGCCTACCCAGGCTTAAGCATCCAGAAACAAATGCACCTTCCCCGCATgggtgtgttgtgctgtaggGAAGTGCACATTTGAAGTGGGTTGCAGTGTAAGTGGGACATTTTACTGATTTGCCTTTAAAGATCTAATCTTCTCTCAAGGGAAGAAGAGCTGCTGGTTTATATAGATCTGtgcagcaaattaaatatattttcagttactGTTTAAACCATTGCATGCTTGAAATGTCAATGTCACAGGTTCAATATTTGCATTTAGAAAAGGCAAAGCCACAGCTTAAActcaacaaaaatatttttctatccTTATTTATTTGGGAACACATTATGTGTATGCTATctgcttgtttaaattgtttcatattcatatttaactgCACATTTTATGTCTGACATCTCTATCTTTGTTGTCTGAAATGTAAATAGGAATATATGTAGTGTGAACATCTATTTATATACGGCTTTGTCACTTTCATAAGGTCATAGGTTGACAGGAAAAAAATCGATGTGTTTTGAATGAATGTATTGCTTGGAAAATCAATTAATGCTTTGTTAAATGTCCTTTTGTTCACCATGTTTCTACTAATCTTGCATGggtactgtataaatatataaaatcactaCATTATTTCCACAAAAAGCTGGTACATTGATTAACTGACAGAAAAATAAGATACTATAGATCTATGGCAGTTGGGGAGAAgtgaagagagaaagaaaatacaacaaatagcCAATTTGAATCCATTGTGTTTGTCtaacaatcaataaaatcaaaagtagACAGTATAGCAACTGAAGCAGCAGTGTTTGTGAGTCACATTGAATGTTGCTAAGGGAAGCTGTCTATTCTGTCATTTCTTTCACAGAGAAAGGAAATTACCGGGGCACAGTCCTATCAGTAATAATGAAAGAATGCAATATTTCCCATCATTGATGCATTGTCTCAGCCTTATATTAAGATCAGTGTTATAATGGAAAAGTCTATTAGTTGTTCATGAACAATTGACCGCAGGATAGCTTGGGTCCATGTTACACAGTGAAAGGCAGTGAACTTCCACCCCAGATAAATGGACTGCACTCTTATAGAACTGATCACAAAAAGGAACATATCAATTCATAATGAAGACCCTATAGCCAAGgcaataatgttttattctttctcgAGTAACACGGAAGAACACAATCTTAATAAACCATACCATTTTAAGTGGGTAGTACTTATTCTGCAAACTACACTGTTCTAGTGGTCTcaggaaataaaaaggataTACAATGTTACATTATAAAAAGTAATGCATTCTCTtagttactttatttttgtatacttcTAAATACTGAGGTGTTTGATGAAGGTTAGCACTGGACAGAAGGAGGTGTCTTGGGTGTCCTAAAAGCTGAATTTCCTTTgacttctttttgttttattttatgttatactTAATATGCCTTTTTGAAggcattttttaatgttgtttaattCATCTGGTTCTGTTGAGAAGCTATGAATGTGGTGTATGTCATCAATGGAGAGACAGGATGGGGGAATTTTGGTTGAATCCATGGATTTATCATGTTGTACATTTGATGTCATAATATACTGTGAAATcaggtggaaaataaataaacccagtAACCTAA

Function

GO: NA

KEGG:

id description
K01054 MGLL; acylglycerol lipase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21821 lncRNA upstream 780147 41976395 ~ 41978666 (+) True G17580
TU21741 lncRNA upstream 1016040 41742350 ~ 41742773 (+) True G17518
TU21735 lncRNA upstream 1041824 41713810 ~ 41716989 (+) True G17514
TU21717 lncRNA upstream 1068614 41688010 ~ 41690199 (+) True G17498
TU21710 lncRNA upstream 1085460 41671378 ~ 41673353 (+) True G17491
TU22180 lncRNA downstream 259738 43053086 ~ 43112636 (+) True G17882
TU22213 lncRNA downstream 442472 43235820 ~ 43236036 (+) True G17909
TU22284 lncRNA downstream 600945 43394293 ~ 43394499 (+) True G17969
TU22306 lncRNA downstream 676722 43470070 ~ 43470846 (+) True G17988
TU22305 lncRNA downstream 706822 43500170 ~ 43500476 (+) True G17987
AMCG00017039 mRNA upstream 33591 42722477 ~ 42725222 (+) True AMCG00017039
AMCG00017038 mRNA upstream 39547 42715949 ~ 42719266 (+) True AMCG00017038
AMCG00017034 mRNA upstream 94385 42649854 ~ 42664428 (+) True AMCG00017034
AMCG00017035 mRNA upstream 128142 42623989 ~ 42630671 (+) True AMCG00017035
AMCG00017037 mRNA upstream 164719 42582352 ~ 42594094 (+) True AMCG00017037
AMCG00017044 mRNA downstream 2850 42796198 ~ 42809702 (+) True AMCG00017044
AMCG00017046 mRNA downstream 27444 42820792 ~ 42844311 (+) True AMCG00017046
AMCG00017045 mRNA downstream 52357 42845705 ~ 42849666 (+) True AMCG00017045
AMCG00017042 mRNA downstream 57371 42850719 ~ 42852294 (+) True AMCG00017042
AMCG00017053 mRNA downstream 302290 43095638 ~ 43097515 (+) True AMCG00017053
TU21955 other upstream 361026 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 4255181 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 8657950 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 8711093 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 9086193 33668629 ~ 33672620 (+) True AMCG00016901
TU22431 other downstream 1332866 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 1861304 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 6609371 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 6920176 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 7758532 50551880 ~ 50552985 (+) True G19113

Expression Profile