RNA id: AMCG00017044


Basic Information

Item Value
RNA id AMCG00017044
length 3807
RNA type mRNA
GC content 0.51
exon number 16
gene id AMCG00017044
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42796198 ~ 42809702 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAAAGGCATCTGGCAGAAGCACGACAACAAAAGAAGCCGACAATGTTGTTATGAAAGGATCTCAAGAGTCAGTCTCGTAAAACGAGAGGCAGGGGCACTTCCTGTAAGATGAAAGGAGTTATATAACTTTAGCACATGGAGTGTGTTCACGGTGGAAACAAtcgttttattaatacattttaatgcacttAACTTCCTGAACCCAGTAACTAACCAGTATGGCCAAGAAGCGCAAAGGGTCTGTTGATATTCCAGCGAAAACAGATACTAAGAGATCTAAGCAAGTCACAAAGGGGACAGCAGTCAAAAAGCCTGGAAAGAAGCGTTTAGAAGATGCAGGCACTGAGGGGGACACACCtgccaagaagaagaaaatcaaCTCGAAGGTATCCGAAACTGGCAACACACCTCCAAAGCAGAGCAGAAAATACTTCAGGGACCGCAAGGGAGTCAAAGCAGAGGTGAAAGAAGAGCCTGTGGATATAAAAGATGACCACTATAGCGGTAACACAAGGCAGGAGCAGTGCACACAGGAGGACAGGGCCTGGGCCGGGCTGCAGGGTGAGGGAGCCGCTGtaaagaaggaggaggaagaggatgacAGTGATGAAGAGTGGGAGGATGTGGAAGAGCTGAGTGAGCCTGTGGGCTCTGCCTCGAGCCTCCCTGAGCCCGTTCTGCCCTCCCAGCCCGTGGAGATCGAGATTGAGACGCCAGAGCAAGCCAAGAAGAGGCAGAGGAGggagaagagagaggccGAGTTTGAGACTTATCTTCGCCGCATGATGAACCGCTTCAATAAGGATGTCATCGTAGACACCCACAAAGTCCATCTCCTGTGTCTGCTGGGCAATGGCTTCTATCGCAATCGGCTGTGCAGTGAGTCGGATCTCCAGGCCATGGCCCTGTCTGTGCTTCCAGATCACCTCTCCTCAATGACCCCGGAAAAGGCAGACATCATGTTCCTGGCCAACCTGGTCAAGTGGTTCGCGTCAACCTTCACCCTGAACCCAGATCTGTCCTATGATGAGAGCGAGAGCCGGCAGTCTGTCCTGGAGCGGAGATTCGGCATGTTCTCTGCCCGAGACCACGAGGAAATGACCCATCTGTTCCTGATTATTTTGCGGGCATTGCAGCTGTTTTGCCGCCTTGTGCTTTCCCTCCAGCCCATTCATCTGAGAGGACCCCCCAGAAAGGGCAAGCCCAGGACTTCGAGCAGTGCTTCTCTGGAGAGCCAGAAATCAGAAGGGAAAACCAAGAAGAGAGGCAAGAAGACGCAGGCTGTGGAGACTGTGCCCGAGGATGAGAACAACAACGACGAGACAAAGGACTGCCCTGCCGGAACAAAGAGACCTGCTGGCGGGAGGGCCAGGATGGGCAAAGGGACAAAGAAACGCAAAGCAGGACAAGATGTTGGTAGCGACTGCAGTGAAAAGCAGGAAATGAGGAGGGAAGGTTTACAGAAGCCCAAAAATGACCGGCGTCGGAGGGTGGCCTCCAAAGTCTCCTACAAGGAAGACAGCGAAGGCGAAGACGACAGTGCCTCCGAGTTCGAACTCTCGGGCGAGGAGGACAGCAGTGATTCTGAGGGGGAAGAGGGAGGAGGGCGGAGGAGGTCAAAGGGTAAGGGCCAGGCATCAGCATCTCAGACAAAGAACTCGGTCCAGAAGAGCCAAGCAGGGAAGAGTCAAAAAAAGAGAAGTGGCAAGACCTTGGCGCAGAAGCAGACAGAGACCTTGAGCAGTGGGGACGAGGATGTCAAGGTGATTGGAGTGATGGGCGTCAAGGGCTCAGACCAGTGGCTAGAGGTCTACCTGGAAAAGGTGGGGAAGTGGGTATGCCTGGACTGTGTGAAGCCCAGTGTGGGCCAGCTGCAGCACTGCTACAAGCAGGCCACCAAGCCCGTGACGTACATCATTGGCATTGACAATGATGGCTTTGTCAAGGACCTCACCAAAAGGTATGACCCAGCCTGGATGACCAACACCAGGAAACGCAGGGTGGATGTGGAATGGTGGGAGGAGACCCTGCTCACCTACAGGAGCCCCTTCACTGAGCGGGAGAAGAAAGAGGACATTGAGCTCCAGGCCAAGCTCCTGGACCAGCCCTTGCCAACTGCCATCTCTGAATACAAAAACCACCCCTTGTATGCTCTCAAGAGACATCTCCTGAAGTATGAAGCCATTTACCCTTCGACTGCGGCCACGCTAGGGTACTGCCGAGGGGAGGCGGTCTATTCCAGGGACTGTGTGCACACGCTGCACTCCAAAGACACCTGGCTCAAAGAGGCGAGGGTGGTGCGGCTTGGCGAGGTTCCCTACAAGATGGTCAAGGGGTTTTCCAATCGCGCCCGCAAGGCCCGCATCCTTGATGCTGAGAACCGGAACAAAGACGACCTGCCGCTGTTCGGCCGCTGGCAGACCGAGGAGTACCAGCCTCCAGTGGCGGTGGAGGGCAAGGTCCCCCGCAATGACTATGGCAATGTGTACCTGTTCCGGCCCTGCATGTTGCCCATTGGCTGTGTGCACATGAGGGTCCCCAATCTCCATCGGGTAGCTCGCAAACTGGGCATCGACTGCGCGCCCGCAGTCACCGGCTTCGACTTCCACTGTGGCTTCTCGCACCCCGTCGTGGAGGGCTATATAGTATGTGAAGAGTACCAAGAAGTTCTCATGGCTGCCTGGGAGAATGAGCAGGCGGACAtagagaagaaagagagagagAAACGGGAGAAGAAAGTCCTGGCGAACTGGAAGCTACTGGTGAAGGGGCTGTTAATACGAGAGCGACTGAAGCGCCGCTATGGGCAGCAGAGCACCGAGATGCACATTGGAGAGGGAGACGGGTTCTCCtccgaagaagaagaagataaagaaaaagaagcGGCCACTGGCTCTCCGACAGTAGCAACTGACCTGACTCACTCCTGGCCGCAGAACAGACAGGCCGGCCCGGAagaggggaaggaggaggggaagaTCGTGCGGAAATCCAAGCGGGAGAGAAGAGGCCAGCAGAAGCATCTCTTCCCCTTTGAGAAGACCTGAAGAGCAGGTACTCCTCACAGACCTGACTTCTTCTTCAAACATGAACACAGTAATTTTAAGCCATTTTCTAATCTGTTGATAGAGGCACTTCGAGAATTATGTTCAAACAAAAGTGTTGTAATTCTGTAATtctgaaaagtattttattcttattttttcctgtgGTTTGGCCAGAGAAATGGGGGGTGGAGTAGTCTAGCCCATTTCTGCTGCACCTGTTCTTGCCTCCACATGCCAAGAGGAGATCTTACTTCTGAGTTTTACTCCTAATAATGACTAATAATGATTAGTTACTGAGAAATCCCCACACCACAACAATATTCCAGCTACTGGGACGGATTCTGGATTTCTACCACTTCTATAAACCAGACCTGTTCTGAATGGTGCCAAGCGTCCCCACCACACTGTATAACACTATTGGGAATTCTGataattgaatgaaaaacatACTGTGCTTCCACATGCAGCTCCAGCATCAGCTATAATTCACGATAGTTGCAGGAGGAACTTCTTTTCCATATATCTCCCAGATCTGAAACGACACCGAATACCTCAGCTTTCTTACCTTGAGATGCTGACCTTGTAGTCTGAATTGACTAAACAAGGCAGAAATGTTCCTGCAGatctacatatttttttcttgtgattATTGCTTTTGTATTGGTAAGATGTAATTTTTTGTAGAAATATGATTGTGTAGCTGAACTTAAaactcaaaaaaataaagtcttgTTTCTAAAACGTAAgtgaaataatta

Function

GO: NA

KEGG:

id description
K10838 XPC; xeroderma pigmentosum group C-complementing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21821 lncRNA upstream 817532 41976395 ~ 41978666 (+) True G17580
TU21741 lncRNA upstream 1053425 41742350 ~ 41742773 (+) True G17518
TU21735 lncRNA upstream 1079209 41713810 ~ 41716989 (+) True G17514
TU21717 lncRNA upstream 1105999 41688010 ~ 41690199 (+) True G17498
TU21710 lncRNA upstream 1122845 41671378 ~ 41673353 (+) True G17491
TU22180 lncRNA downstream 243384 43053086 ~ 43112636 (+) True G17882
TU22213 lncRNA downstream 426118 43235820 ~ 43236036 (+) True G17909
TU22284 lncRNA downstream 584591 43394293 ~ 43394499 (+) True G17969
TU22306 lncRNA downstream 660368 43470070 ~ 43470846 (+) True G17988
TU22305 lncRNA downstream 690468 43500170 ~ 43500476 (+) True G17987
AMCG00017043 mRNA upstream 2850 42758813 ~ 42793348 (+) True AMCG00017043
AMCG00017039 mRNA upstream 70976 42722477 ~ 42725222 (+) True AMCG00017039
AMCG00017038 mRNA upstream 76932 42715949 ~ 42719266 (+) True AMCG00017038
AMCG00017034 mRNA upstream 131770 42649854 ~ 42664428 (+) True AMCG00017034
AMCG00017035 mRNA upstream 165527 42623989 ~ 42630671 (+) True AMCG00017035
AMCG00017046 mRNA downstream 11090 42820792 ~ 42844311 (+) True AMCG00017046
AMCG00017045 mRNA downstream 36003 42845705 ~ 42849666 (+) True AMCG00017045
AMCG00017042 mRNA downstream 41017 42850719 ~ 42852294 (+) True AMCG00017042
AMCG00017053 mRNA downstream 285936 43095638 ~ 43097515 (+) True AMCG00017053
AMCG00017054 mRNA downstream 308516 43118218 ~ 43124403 (+) True AMCG00017054
TU21955 other upstream 398411 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 4292566 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 8695335 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 8748478 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 9123578 33668629 ~ 33672620 (+) True AMCG00016901
TU22431 other downstream 1316512 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 1844950 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 6593017 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 6903822 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 7742178 50551880 ~ 50552985 (+) True G19113

Expression Profile