RNA id: AMCG00017046


Basic Information

Item Value
RNA id AMCG00017046
length 4101
RNA type mRNA
GC content 0.50
exon number 29
gene id AMCG00017046
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42820792 ~ 42844311 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGTGCTGTGCTGCTTGGTGTCAACACTGCTGTAGTAACTGAAAACAATCCCGCTGGGCTCAGATTAGTTGGAGCAGGATATtgtataatatatgaatatatctatatatttgaaACGAACAGAATGAGAGCCGTTCCGACATGGATCGACAAAGTGCACGACCGGGATAAGGTGGAGCAATGTATTTATGACCTCGCCTTTAAACCCGATGGGAGTCAACTTATAGTTGCAGCTGGAAACAGAGTTCTGGTGTATGACACAGCAGATGGGACTCTCATTCAGCCTCTGAAAGGACATAAAGACACAGTGTATTGTGTAGCTTATGCCAAAGATGgcaaGCGCTTTGCTTCTGGGTCTGCTGACAAAAGTATCATCATTTGGACTTCCAAACTGGAGGGCATTTTGAAGTACACGCACAATGACTCCATTCAGTGTGTGTCATATAATCCAGTTACACACCAGCTGGCATCATGCTCTTCTGGTGACTTTGGTTTATGGTCCCCAGAGCAGAAATCTGTCTCCAAGCACAAAGTGAGCAGTAAAATCACATGTTGTGGGTGGACCAACGATGGGCAATACCTTGCTTTGGGTATGCAGAACGGAGTGGTGAGCATCCGCAATAAAAACGGCGAGGAGAAAGTGAAGATTGAGCGCCCTGGAGGGTCCTTGTCAACCATCTGGTCCATCGCCTGGAACCCGTCCAAAGATGAACACAATGATATTTTGGCAGTGGCAGACTGGGGACAGAAGCTATCTTTCTATCAACTTAGTGGGAAACAGATTGGAAAAGACAGGGCCCTGAATTTCGATCCTTGCTGCGTCAGCTATTTCTCCAAAGGAGAGTATATTGTCATGGGGGGCTCAGACAAGCAGGCCTCTCTTTACACCAAAGACGGAGTTCGTTTGGGCACCATTGGAGAACAGAATTCCTGGGTCTGGTCCTGCAGAGTCAAGCCTGAGTCCAACTACGTGGTGGTTGGTTGCCAGGATGGGACCATTGCCTTTTACCAGTTGATTTTCAGTACCGTTCACGGGCTTTATAAAGACAGATATGCCTACAGGGACAGCATGACTGACGTCATTGTACAGCATCTCATCACTGAGCAGAAGGTGCGCATAAAGTGCAGGGAGCTGGTGAAGAAAATAGCAATCTACAAGAACAGGCTAGCCATCCAGCTCCCAGAGAAAATCCTCATTTATGAGCTGTACTCGGATGACTCTTCTGATATGCATTACCGAGTTAAGGAGAAGATCTGCAAGAAGTTTGAGTGCAACCTGCTGGTCGTGTGCTCACAGCATATCATCCTGTGCCAGGTGAGGTGTAGCTTCGATGTGCCTCTCGATGGGAGTGAGTTAGAGCAGGCTGTGGCAGAACTGTTAATTGTACTTTTGCAGGAAAAGAGGCTGCAGTGCCTGTCATTCAACAGTATAAAGGAGAGGGAGTGGCTCATGGAGTCTTTGATTCGGTACATCAAAaTTCTGAAGATATTTGTGGACAACCCATTTGCGATCACGCTGCTGAAACAGGCAACGTCCGTGCGCTGCCTGGACATGAGCGCCTCCAGGAACAAGCTGGCCGTCGTGGACGAGCACAACACCTGCCTGGTGTATGACATCCGCACCAAGGAGCTGCTGTTCCAGGAGCCAAATGCAAACAGCGTTGCTTGGAATACCCAGTGTGAGGACATGCTGTGTTTCTCAGGCAGTGGATACCTCAACATCAAGGCAAGCAACTTCCCAGTGCATCAGCAGAAGCTCCAGGGCTTTGTGGTGGGCTACAATGGCTCCAAGATCTTCTGTCTCCACGTCTACGCCATGTCAGCTGTGGAGGTCCCCCAGTCTGCTCCAATGTACCAGTATTTGGAGAAGAAGATGTTTAAAGAGGCCTATCAGATTGCTTGTTTGGGAGTAACCGACAGTGACTGGAGGGACCTGGCCACGGAGGCTCTTGAGGGGCTCGACTTTGAAACAGCGAAGAAGGCATTTATCCGAGTTCGGGACCTACGCTATCTGGAACTCATAAACAGCATTGAGgagaggaagaagagaggcGAAACCAACAATGAACTCTTCCTGGCGGATGTTTTTGCCTACCAGGGGAAATTCCACGAGGCGGCCAAACTGTACAAGAAGACGGGCAATGACAGCCGAGCCCTCGACATGTACACCGATCTGCGCATGTTCGAATATGCCAAGGATTTCCTCGGCTCAGGAGATCCGAAGGACACCAAGCTGCTGATTACCAAACAAGCCGACTGGGCCAAGAACATCAATGAGCCCCGCGCTGCGGCGGAGATGTACCTGTCGGCAGGGGAGCACATGAAGGCCATCGAGATCATTGGCGATCACGGCTGGGTGGACATGTTAATCGACATCGCACGCAAACTGGACAAGGCCGAGCGTGAGCCTCTCTCAAAGTGCGCCGCCTTCTTCAAAAAGCTCAAGCACCACGGCTATGCTGCTGAGACCTACGCCAAAATGGGGGACCTGAAGGCTCTGGTGTTGCTTCATGTGGATGTGTACCACTGGGAGGAGGCATTTGAGCTGCTGGAGAAGCACCCCGAGTTCAGAGATGACGTCTATGTGCCTTATGCTCAGTGGCTGGCCGAGAACGACAGGTTTGAAGAAGCTCAAAAAGCATTCCACAAGGCCGGGCGGCAGGACGAGGCTGTGAAAGTGCTGGAGCAGCTGACTCACAACGCTGTGGTGGAGAGCAGGTTTAACGACGCAGCCTATTACTACTGGATGCTATCCATGCAGTGTCTTGATATAGCCAGAGaaaatgaaagtaaGAAAGAAGAGATGCTGAAGAAATTCCACAGGTTCCAGCACTTGGCAGAGCTGTATCACGTTTACCACTCCATTCAGCGCTACACTGACGAGCCCTTCAGCTCTCATCTGCCAGAAACCCTCTTCAATATCTCCAGGTTCTTGCTGCATAACCTCACCAAGGACGTACCACTGGGCATCTCCAAAGCCAGAAACACCCTGTTCGCTTTGGCCAAGCAGAGCAAGGCCCTGGGGGCATTCAAGCTGGCCCGCCATGCCTATGAGAAGCTGCAGGGCCTTCGCATCCCGGCCCGCTTCCAGGAGTCCATCGAGCTGGGCAGCCTGACGGTGCGCTCCAAACCCTTCCACGACAGCGAGGACCTTGTCCCCATGTGCTACCGATGCTCCACAAACAACCCACTCCTAAACAATCAAGGGAACGTGTGCATCAACTGCCGGCAGCCTTTCATCTTCTCGGCGTCTTCCTATGAGGTCCTGCCCCTCATTGAATTCTACCTGGAGGAGGGCATCACTGATGAAGAGGCCGTGTCCCTCATTGACCTGGAGGCGCCGCAGACTGAGAAGAGAGGAATTAAGTGGCAGGAGATGAGCAGCGGCGAATCCCAATCTCTGAGACTGGACGACAGCATGGATGACCCCCTGGAGGACCCATTCATGGCCAAGCTGAGCTTTGAGcaAGGTGGCTCGGAGTTCGTCCCGGTGGTGGTGAGTAAGGCGGTGCTGCGCTCCATGAGCAGGAGAGATGTGCTGATCAAGCGCTGGCCACGGCCACTCAGCTGGCAGTACTACAGGTCCCTGCTGCCCGATGTCTCCATCACCATGTGCCCCTCCTGCTTTCAGATGTTCCACAGTGAGGACTACGAACTCTTGGTCCTCCAGCACAACTGCTGTCCGTACTGTCGCAGGCCCATAGACGAGCCGAACTGAGCTCAGAACTCCAGCTCTGGGCAGAGACTTACGCtaattgtctgtctgtccttaTTTACTCAGTCATTAAAATCAATTGATTGTATATCTGGTGATTTGTCCCTGTTGGTGGCTAAGGTTCACTCTGCACACGCTACTTCAGCCGATCCGTGTAATAGGATTAAGTGGATCAGATTTCTCAGGGCTTTGGCAATAgcattttgtgacattttggagggggggggaattaattttgttgtagcttcaaaaaatgaacttttcacttcattattattatgtattattttaaagtacaagTTGCATCTGGTATATGGTTTTGGtgtatttaaagcattttttgtattattctgttgtATACTTGAACACTAATATTTATTGTATCG

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0010172 embryonic body morphogenesis biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:0045879 negative regulation of smoothened signaling pathway biological_process
GO:0072001 renal system development biological_process
GO:0060271 cilium assembly biological_process
GO:0035721 intraciliary retrograde transport biological_process
GO:0030991 intraciliary transport particle A cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K19656 IFT122; intraflagellar transport protein 122

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21821 lncRNA upstream 842126 41976395 ~ 41978666 (+) True G17580
TU21741 lncRNA upstream 1078019 41742350 ~ 41742773 (+) True G17518
TU21735 lncRNA upstream 1103803 41713810 ~ 41716989 (+) True G17514
TU21717 lncRNA upstream 1130593 41688010 ~ 41690199 (+) True G17498
TU21710 lncRNA upstream 1147439 41671378 ~ 41673353 (+) True G17491
TU22180 lncRNA downstream 208775 43053086 ~ 43112636 (+) True G17882
TU22213 lncRNA downstream 391509 43235820 ~ 43236036 (+) True G17909
TU22284 lncRNA downstream 549982 43394293 ~ 43394499 (+) True G17969
TU22306 lncRNA downstream 625759 43470070 ~ 43470846 (+) True G17988
TU22305 lncRNA downstream 655859 43500170 ~ 43500476 (+) True G17987
AMCG00017044 mRNA upstream 11090 42796198 ~ 42809702 (+) True AMCG00017044
AMCG00017043 mRNA upstream 27444 42758813 ~ 42793348 (+) True AMCG00017043
AMCG00017039 mRNA upstream 95570 42722477 ~ 42725222 (+) True AMCG00017039
AMCG00017038 mRNA upstream 101526 42715949 ~ 42719266 (+) True AMCG00017038
AMCG00017034 mRNA upstream 156364 42649854 ~ 42664428 (+) True AMCG00017034
AMCG00017045 mRNA downstream 1394 42845705 ~ 42849666 (+) True AMCG00017045
AMCG00017042 mRNA downstream 6408 42850719 ~ 42852294 (+) True AMCG00017042
AMCG00017053 mRNA downstream 251327 43095638 ~ 43097515 (+) True AMCG00017053
AMCG00017054 mRNA downstream 273907 43118218 ~ 43124403 (+) True AMCG00017054
AMCG00017056 mRNA downstream 464384 43308695 ~ 43314951 (+) True AMCG00017056
TU21955 other upstream 423005 42391297 ~ 42397787 (+) True G17697
TU21320 other upstream 4317160 38496051 ~ 38503632 (+) True G17193
TU20555 other upstream 8719929 34100315 ~ 34100863 (+) True G16550
TU20550 other upstream 8773072 34047371 ~ 34047720 (+) True G16546
TU20517 other upstream 9148172 33668629 ~ 33672620 (+) True AMCG00016901
TU22431 other downstream 1281903 44126214 ~ 44131602 (+) False AMCG00017078
TU22550 other downstream 1810341 44654652 ~ 44656098 (+) True G18192
TU23388 other downstream 6558408 49402719 ~ 49403634 (+) False AMCG00017173
TU23515 other downstream 6869213 49713524 ~ 49721471 (+) False AMCG00017183
TU23710 other downstream 7707569 50551880 ~ 50552985 (+) True G19113

Expression Profile