RNA id: AMCG00017048


Basic Information

Item Value
RNA id AMCG00017048
length 2229
RNA type mRNA
GC content 0.48
exon number 12
gene id AMCG00017048
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42809776 ~ 42815644 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGAGTAGTGAGGCAATCGCGCAAACTCGAAAGCAGCAGAAGTTTGACTGAGAAACgtcaattaatttagttttccggatttttgttttagtattcgAGCACAGAAGAGGCTTTCTATGCGTGAATGCAAACCAGAAACAAGGATCGAGTCGGTTTTAACAACGTTTTCCCTAATATAGCTGGTGTAGAGTAACATTTTACTTtagcatttctgttttgtaggAATTTAAGTGCATCCAGAGGGCGGGGATATTCGCACAATGTCGGCATCTAATTATCCCGGAGGAGAGCGCAGGGAGCAGCATGTGAAAGTGGCCAGTCAAGCCAAGCCCGGGTTCCTGGAGCGGCTGGGCGAGACAACAGGGGGGATGGTGGTTGGAGTCGGGCTGTTTGCGCTGTCGTTTTACGTCCTCTTTACTAACGAGGGCCGAGCTCTGAGGACGGCATCCTCGCTGGATGAGGGTCTGTCTCTGGTGGTGCCGCTGGATAGCATCCACAGTGTCGAGCCACAAAACAACGGCAAGCTGGTACACCTGTCTGGGCCGCTGCGGACTTTCCAGCCCCTTTATGACCCCAACTACAGAATCTCCATCCACTCGGTCAAGCTGAAGAGGGAAGTGGAAATGTACCAGTGGGTGGAGTACCAAGAGAGCCGGGACTATGAAGAAAATGGGGAACGTAAGACTGAAACCACATACACCTACAATACTGAGTGGAAGTCTGAGGTGATCAACAGCAGGAATTTCGATAAGGAGATAGGCCACATCAACCCCAGtgccatGGCTGTGGAGTCGGTGACAGTGGTGGCACCTGATGTCTTGGTAGGacgcttctctctctccaaagGCCTGGTAGAGAAGATCGACAACTTCAAGAAGCTAAGTCTGGTGGGACTCCCTCCTCTGGATTTCTTTGTGACTGTACACGAGAACTACTTCTACCACACCCAAAACCCCCGGCACCCAGAGGCTAGTGCAGACGCCTTGACAGCTAATGCAACTGTGGGAGACGTGCGAGTGTCCTTCTCCTACGCTGGACTGAGCGGAGAGGGAAACTACCCCGGACCTGCGCAGGTGGTCAGCATTGTGGCTCGCCAGAAAGATGAACGGCTGGTTCCCTATCAGTCCAAGTCCGGGGACGTTCTGGAGTTCCTGTACCTTGAGGATCTGTCGGCTCAGGAGGTGTTTGAGAAGGAACATCAGAGTAACAAGCTGAAGACCTGGGCGCTGCGAGTCGGGGGCTGGCTGCTGATGTTCCTCGGGATCAGTCTGACCATCAGAATCTTCCACACCCTGGTGGACTGGCTGCCCCTGGTGCGAGATCTGGTAAGCCTGGGCCTGAAGCTGTTCGCCCTCTCTGTGGCCACCTCGCTGTCCCTGGTCACTATTGCTGCCGGCTGGCTCTTCTACCGCCCCCTGGTGGCCAGTCTGCTGGTGGCTCTGGCCCTGGTGCCAATCATACTTGCCCGTAGCAAAGCATCGCCCAAGAAGAACCAGTGAGTATACAGGGAGCAGGAGGCCGCACTGAACCAAAGAGGACAAAGCTTCCTTATTTTCTAATGGACAAACAGGGCCTcataataacttaattaaattgtacAGTGGAAAATCAGGCCCAGAATGTATAACCAAGCTGTATGTCTCTGGCAAagaatgtatgtgtgcatttcgAGTGTTTTTTAGAAATGCTACTCCAGGGAAATTGTATATTGCATGGATTTCACTCTGCTGCATGGTGTGAATACGTCTGTAGGTCTAAGGAAGCTCAGCATTAGTTAAAGCTGGGTGAAGGAAGGTTAAAATCCTTATTGACAGACATGATAGAAGCAGATAAGTCTCGCATCTTGTCTGCTTGAAGACTGAAGTTTCTCATTCAGTTCCTAAGTGTCTCTTTATCTATACTGGTCCTTTTGGAGCACTGTCATTCTGAAAGAAAACTCTTGTCAGTTATACTTGAAATTAAtctttgtgtaaaaaaataaaaatgtaatacgaCATCTTCctaaattaagtgtttttttgctCTCAAGGTACAGTTAgaattgaaatagttttatttaaaaataaatgtattgatagGAGAGgttcattgtatttttgtattgtaagtGCCTTTCACTTTGCTGTTATGTTGGTATAGGGCTTTACAGTGTGAAACACACTCACCTCATATCTTAAGTTAACTGTTGTTAACTTTGTGTGGCTCACAACAGGTAAATCCAGCTTGAAG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22024 lncRNA downstream 258003 42550325 ~ 42551773 (-) True G17754
TU22026 lncRNA downstream 260358 42544360 ~ 42549418 (-) True G17755
TU21787 lncRNA downstream 871242 41936926 ~ 41938534 (-) True AMCG00017014
TU21724 lncRNA downstream 1204381 41601924 ~ 41605395 (-) True G17505
TU21621 lncRNA downstream 1564551 41244926 ~ 41245225 (-) True G17423
TU22171 lncRNA upstream 150712 42966356 ~ 42974433 (-) True AMCG00017051
TU22214 lncRNA upstream 420161 43235805 ~ 43236036 (-) True G17910
TU22218 lncRNA upstream 464593 43280237 ~ 43280863 (-) False AMCG00017061
TU22237 lncRNA upstream 490129 43305773 ~ 43308614 (-) False AMCG00017060
TU22340 lncRNA upstream 817577 43633221 ~ 43633422 (-) True G18015
AMCG00017040 mRNA downstream 71824 42721872 ~ 42737952 (-) True AMCG00017040
AMCG00017041 mRNA downstream 96888 42688499 ~ 42712888 (-) True AMCG00017041
AMCG00017036 mRNA downstream 139663 42666712 ~ 42670113 (-) True AMCG00017036
AMCG00017030 mRNA downstream 295162 42511057 ~ 42514614 (-) True AMCG00017030
AMCG00017016 mRNA downstream 801427 41971193 ~ 42008349 (-) True AMCG00017016
AMCG00017047 mRNA upstream 756 42816400 ~ 42820740 (-) True AMCG00017047
AMCG00017049 mRNA upstream 40480 42856124 ~ 42905046 (-) True AMCG00017049
AMCG00017050 mRNA upstream 104058 42919702 ~ 42936549 (-) True AMCG00017050
AMCG00017051 mRNA upstream 133347 42948991 ~ 42974316 (-) False AMCG00017051
AMCG00017052 mRNA upstream 185182 43000826 ~ 43001932 (-) True AMCG00017052
TU21619 other downstream 1592545 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 4750837 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 4750837 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 5051305 37758157 ~ 37758471 (-) True G17032
TU20574 other downstream 8701835 34106690 ~ 34107941 (-) True G16563
TU23267 other upstream 5673483 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 8615211 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 8629943 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 8629943 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 9040602 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile