RNA id: TU22171


Basic Information

Item Value
RNA id TU22171
length 1203
lncRNA type sense_over
GC content 0.52
exon number 2
gene id AMCG00017051
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42948991 ~ 42974433 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGCCCTGGTTCTCTAAAAGGAGCCCGAGCTGGCTCTCgttctgttcctctctctctctctctctctctctctctgcctctctctctctctctctcactcactcacaccgGGCTGGCTGACACAGAGATAGGGTCAGGTGGCTGCAGCTGTGGAAGGGGTCTCTCCGGGAGCTAATAGcacgaggaggaggagtggtGTAGACCCGGCTAAGAGGGACACCAGCCCCTCCCTCTTCTCTTCTCGTCTCGTCTCCTCTCCTGTTCCATCcccactccccccacccccctcttccCTCCTCACCAGCAGCCAGACACCACGGCACGGCACAGTGCACAGCTGACTCACAGGAAGTCTTAACAGCCCAGCCTTGGCTTGTTTTGCGTTTGAATGTGGTGTGCTGGGACATGAGAGGAGCTGCTCCTTCCAGCAAGACGACGGAGTGACAGAGACAGGACTCtcctttctgtctttttatttttttgggggggtggcaTTATTGTCATCATGTAGCACTTCTCCTCTGCTGCAGCCCCTACCCCCCTTGTCCTTCAACCTCCCCCAACCCTGGCCCCCACCCCAAAGTCTGCTTTGGGGGGTCAAATCGGCATTTCTGAGTGAGAGTCCAAGAGACAGTGACAATGGTTCAGCGCTTCAGCCTCAGAAGGCAGCTCTCTaagcAGCTGAAAAACACTTCTGCTGAAACTGTAAATATTTCTCCACCCTCGCTGGCACCAGAGACAACAAGTAGGCAAAGATGGATTGGCCTGGGAACAATGTACAGCCTGTGTGCAGAACGTGGGCAGCTACGGGAGTGGAGTGCAGTGTTTCTGCTCGCAAGACGGAAATCGGACAGTCTAGAGAGCCTGGCTTTGTTTGTCCTGTCAAATGCGCAGTTTCCACTTTCACCATATCTGTGCTTACTAATCAACTAAATATTGGGCCCCCCAAAATTAAGCTCCCTTTGAATTCTCCTCACTGGTATGCATCGGAAATTGCACCTTTAGGAAATGTGAAGGTTGTTTATCTAATTAAAGCCAGCATTCCCATGTTTGTGTTGTACTAGACATTtcttatgtattaatattagaGCACACATTCTGTGCTACCAGAGAGGAAATGGCTGTTGAGCAGCAATAAAGTTAGCCTAATTTGCCTGGTTATTAGCTTCAGTTATTGTGCTGTGCTCTggatggtggtgggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22024 lncRNA downstream 414583 42550325 ~ 42551773 (-) True G17754
TU22026 lncRNA downstream 416938 42544360 ~ 42549418 (-) True G17755
TU21787 lncRNA downstream 1027822 41936926 ~ 41938534 (-) True AMCG00017014
TU21724 lncRNA downstream 1360961 41601924 ~ 41605395 (-) True G17505
TU21621 lncRNA downstream 1721131 41244926 ~ 41245225 (-) True G17423
TU22214 lncRNA upstream 261372 43235805 ~ 43236036 (-) True G17910
TU22218 lncRNA upstream 305804 43280237 ~ 43280863 (-) False AMCG00017061
TU22237 lncRNA upstream 331340 43305773 ~ 43308614 (-) False AMCG00017060
TU22340 lncRNA upstream 658788 43633221 ~ 43633422 (-) True G18015
TU22342 lncRNA upstream 659337 43633770 ~ 43634422 (-) False AMCG00017067
AMCG00017050 mRNA downstream 29807 42919702 ~ 42936549 (-) True AMCG00017050
AMCG00017049 mRNA downstream 61310 42856124 ~ 42905046 (-) True AMCG00017049
AMCG00017047 mRNA downstream 145616 42816400 ~ 42820740 (-) True AMCG00017047
AMCG00017048 mRNA downstream 150712 42809776 ~ 42815644 (-) True AMCG00017048
AMCG00017040 mRNA downstream 228404 42721872 ~ 42737952 (-) True AMCG00017040
AMCG00017052 mRNA upstream 26393 43000826 ~ 43001932 (-) True AMCG00017052
AMCG00017063 mRNA upstream 152823 43127256 ~ 43128666 (-) True AMCG00017063
AMCG00017062 mRNA upstream 156917 43131350 ~ 43155633 (-) True AMCG00017062
AMCG00017064 mRNA upstream 181206 43155639 ~ 43270969 (-) True AMCG00017064
AMCG00017061 mRNA upstream 305987 43280420 ~ 43286603 (-) True AMCG00017061
TU22128 other downstream 101740 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 1749125 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 4907417 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 4907417 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 5207885 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 5514694 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 8456422 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 8471154 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 8471154 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 8881813 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile