RNA id: AMCG00017057


Basic Information

Item Value
RNA id AMCG00017057
length 1995
RNA type mRNA
GC content 0.37
exon number 5
gene id AMCG00017057
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43297944 ~ 43301808 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGACGGCACTGGAATGTGAGGGCTCCCAGCCCCTTCAGAAAACCTAAGTAAGTTGtcactatttgtattattagtattattgctTATTGTTTGTTTGGAGGATGCTTTTATCCATGATGACTCACAGAAAGCACAATTTCATTATAAAAGTGACAttctattattttaacaaagtaAATGTGGAAAGTAACAATGCAAAAAGTTACAGACAAAATAATTGGGGTGCAGGATTGCAGTACTACAGAAAGTTTACATTCAGGTACATTAATAAGGTCAAAGACACCCTTTgtctctgtatttgtatttttatttttttaagtaatccTGTTAGCACAGGAGCAGAGCCAATACACAAGTCAGATACAACTGTTTTGTATCAGCAGTTAATTTGCAgacttttgttttgaatttggaCTTTTCCAGGAATACTTGTGTAACCTACACATATTATTTCCACTTATACTGCTTACGTACTGGTTTTGGGGATTAGGCAGTTCTTGCCCTCCCTGTAACTTTACCCAGTGTTGCTCCTCCCACACAGATCACAGCAGGTCAAGGTAAGACTACTCAAATTAGCAGCTTGTCTTGTATGTAGTATTTCCTCAGGTCCTCATTAGTGTTGGCTCCTGATTTAAAAACTATAACTCTGAGAACAACTCAAGGCATAGTTAACTGCACATCCTACAACAATGGTGAGCCAAAGTCTTGTGAAAGTGAATTACGGTTGTTGGGATAGCTCTTGTTTGCTTAATGGCCACCATTTACACAcaaatggacatttttattttttatttttatgtttgttttcaattggaAGGAGGTTTATAAACAGCCTGTTTTCTAGCAGCCCTTAAAGACCAGTATTCATCATCattgatttgtatttctatatatatatttctgcagcATGACCTTCTGGTCAAGGAGTCATCCAGTTGTTTTTCCTCATGTCAAAACTGATCACTGGAGCAAAATGAAGACGGCGGTGCCCTCTTTTTCAATAGCAGGGCCTGGGGGAGTGGTTCGTGGTAaagGTCCTGGCAGTCTGGACACTTTGGTGCGTTTCTGTTATGACTCATCTGGCAGGTTGTTTCCTGTTCTAATTTCAGATACGTCAGACCTCACCCACAAGGAACTTGGTAGTAAAGGGCCAGTGAGATCACACAGCTCCCACTGCAGTTCCACATCTCCACAGGACCTGCCGCAGTACAGGAATGAGTACAATGACCGTGCTCGCAGGGGCTTCTGCTACTGGCCCCTTGAAAAGAGGGTCTCCAAGTGTTACGGATACAGTTTCGGAGCCTACAAGACTGCGCTTGGATTGCCAAGAGTCTGAAGAGGAAGACTTCTAAAATATCAAtaacaccattttttttttctgtctgagcaaattaattcagtgttatttaatgtttaatttattttgtcaaaacatttattttaatgatctttCAACCATTTAGTTTCCAATAGTTTCCAATACAATGGAAGATCATTATTAGCATTGTTTTGGGGTTTAGGAGAATGAAAGGGTGAAAATAAAGTGTACCTGTTGTGAATTGCACAATAAAATTGCACTGGCATAGTCATTTGTGAATTTTGTTAACGACTATTAGATTTAATTAGTAAATGTAATGCAATCGTAGGTATTATTATGGAATGGTTATGCATAGCTTCATACAAATTCAAGagactgtttattttatgttattccttaataataataataataataatattatatattgtaatgctTTGCAGACTTTTAATTGCAATAGTcatgcaagtgttttatttttattgctagGTGGAATATGAGACTAGCATGTTGTACAATAGTGCCATCTGCTGAAAGATACTATGGGACTGGTTAATTTCAACAATGCCAATCCAGCTACAAAGAGAAGCACTGTGAGAGAGATTTACAGTGGTTTTCCACTTATATATTTGAAGGAACTACACTACTTTTATGTACAGGTGTATATTTAGctaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22218 lncRNA downstream 17081 43280237 ~ 43280863 (-) False AMCG00017061
TU22214 lncRNA downstream 61908 43235805 ~ 43236036 (-) True G17910
TU22171 lncRNA downstream 323511 42966356 ~ 42974433 (-) True AMCG00017051
TU22024 lncRNA downstream 746171 42550325 ~ 42551773 (-) True G17754
TU22026 lncRNA downstream 748526 42544360 ~ 42549418 (-) True G17755
TU22237 lncRNA upstream 3965 43305773 ~ 43308614 (-) False AMCG00017060
TU22340 lncRNA upstream 331413 43633221 ~ 43633422 (-) True G18015
TU22342 lncRNA upstream 331962 43633770 ~ 43634422 (-) False AMCG00017067
TU22403 lncRNA upstream 535369 43837177 ~ 43891907 (-) True G18066
TU22443 lncRNA upstream 834380 44136188 ~ 44138542 (-) True G18101
AMCG00017058 mRNA downstream 1655 43291325 ~ 43296289 (-) True AMCG00017058
AMCG00017061 mRNA downstream 11341 43280420 ~ 43286603 (-) True AMCG00017061
AMCG00017064 mRNA downstream 26975 43155639 ~ 43270969 (-) True AMCG00017064
AMCG00017062 mRNA downstream 142311 43131350 ~ 43155633 (-) True AMCG00017062
AMCG00017063 mRNA downstream 169278 43127256 ~ 43128666 (-) True AMCG00017063
AMCG00017060 mRNA upstream 3889 43305697 ~ 43308626 (-) True AMCG00017060
AMCG00017059 mRNA upstream 42662 43344470 ~ 43364869 (-) True AMCG00017059
AMCG00017067 mRNA upstream 332488 43634296 ~ 43659602 (-) True AMCG00017067
AMCG00017075 mRNA upstream 555685 43857493 ~ 43872095 (-) True AMCG00017075
AMCG00017074 mRNA upstream 579470 43881278 ~ 43913423 (-) True AMCG00017074
TU22128 other downstream 433328 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 2080713 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 5239005 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 5239005 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 5539473 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 5187319 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 8129047 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 8143779 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 8143779 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 8554438 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile