RNA id: AMCG00017059


Basic Information

Item Value
RNA id AMCG00017059
length 4323
RNA type mRNA
GC content 0.42
exon number 11
gene id AMCG00017059
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43344470 ~ 43364869 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGTCTTGCCCAGATCGCCGCTGTCGTCGAGCTCCCAGCGTGCATCTGGGTGTAAACAGAGACTATGGCTGACGAGGAGGGAGGTGGAGACCAgaatatcaacaacaacatggGGAATCAGCTGGAGCTTTTACCGGAAAAtgaggaggaagatgaagatgaCATGGAAACTGAAGATCGTGATGGTGAAAGAGCAGAAAAGCCCAACATTATCAACTTTGACCCCAGTCTCCCAACGTCACATGCTTACCTAGGCATGGACATGGAGGAGTTCCATGGGCGCACAGTGCACGATGAGGACAGCTGCCAGATGATCCCGGTGCTGCCCCACACCGCCGTGATGCTGATCCCCGGGCAGACATTGCCCCTTCAGCTTTTCAGACCTCAGGAGGTCAGCATGATGAGGAATCTCATCCAGAAGGACAGGACCTTCGCAGTGCTTGCATACAGTGATGCAGGGGACAGACAGGCGGAGTTCGGAACGACGGCCGAGATCTACGCATATCGGGAGGAGCAGGAGTACGGCATCGAGACTGTCAAAGTAAAGGCAGTGGGAAGACAGCGGTTCAAGGTGCACGAAATCAGAACGCAGGCCGATGGGATCAGACAGGCAAAGGTGCAGATCCTCCCTGAGAGAATCCTCCCAGCCACGCTGTGCGCGGTGCAGCTCAGCTCCCAGTCCCGGCTCCACATGCACACAGCCTCCCAGCCCCCGGACAAGCAGTGCAAGCCGGTACAGGGCTGGTGGGGCAAGTACCAGAAGAGAAAATTCCATTGTGCAAATCTGACTTCCTGGCCTGCATGGGTTTATTCCCTGTATGATTCGGAAATCCTAATGGACCGAGTGAAGAGGCAGCTACACGAGTGGGATGAAAATTTGAAAGACGAATCCCTCCCCTCAAATGCTATAGATTTCTCCTATCGCGTTGCCGCTTGCCTGCCCATTGACGATGCCTTGCGTATCCAGCTGCTAAAAATAGGCAGCGCAATCCAGAGGCTGCGCTGTGAGCTGGACATCATGGACCGGTGCACCTCCCTTTGTTGTAAGCAATGTCAGGACACCGAGATAACaaccaaaaatgaaatattcagTTTGTCTCTATATGGACCCATGGCTGCATATGTCAATCCACACGGATACGTCCATGAGACTCTGACGGTGTACAAGGCAAACAACCTCACCCTGACAGGAAGGCCATCCACGCTGCAAAGCTGGTTCCCAGGGTATGcttggacagtagcacagtgccGGACCTGTGGCTCTCACATGGGCTGGAAGTTCACGGCCACCAAGAAAGACATGTCGCCATCGAAGTTCTGGGGACTGACCCGCTCTGCGATGCTGCCCCGTATCCCTAAGTCAGAAGACGAGGACGGGGAAGAAGGTTCGCGGCTCCTCTGCCTGTAACGTTTCTGGTGTAAATGCAAGCGAAATGAGCTCCAAAGCTTGGTAATCAGAATCCACTACTCCTATTTATCATAACTAAAGCCAGCTTACAACTCTGCCCAAACTCTCTGCAGTTTAGGTTCTCAGTGATGAAGATTGAAGCTGGCTGTTGGTGTCAGAAACCGGAAAGcaatatgcattttgtaatgtgcCAATAATTGCTGTACAGTACTATGAgctggggagagaaaaaaaatgacaataaagtTTATTCGGCAGCCCACCATATCCCTGCCATAGCATGCTAGCCTCCCAAACACCTGTGTGCTGTAAGTTCAGTACTGTCtaacaatatacaatatcaGGCTTCACATATCTGCAATAGAGGTGACCTTGTGGTTTTCAAATTTTACTGGCATCTCGTTTTCTCCCTTTTTCATTAGCCTGTGGCAGTCCTGGTTGTTCATAGTCCGTGGTGTCTCAGAGATACTGCCAAGTGTGTGCGACTCTGCATGCAGTTAAGTAGGATATTAGTGTGGTTAGACCATGTACTGTACTGTGGGGAAAATAATCTTGTTCCCTGGGTCCGTTTCCGGTATAGCACCTGTGTCAGATGTCGTCTTTTTATTCCTCTGTGTTAAAGTTCAGACTACTGTGACCTGTAAGTAATTCTTAATAAGAAATCTCTATCTATATTTGGAAAGGTGAAAAAGGTGCGTCATGGTCTTTAACTGTGTGCCtcggaaaagaaaagaaatactgccccatgagaaaatatattcatgGGCGGCTGATGGAAGATTCTGTGTGTGACAGCTCTGTTAGGCATTGAATTTCTTTCTGCATGCAGTATAAATGTATCACTCTGGGTCCAAGTCAAGAAACAGTACTGCTTAATCTTTTAAAGCACCTTTTTAAATTGGCATTTAATGACTTCAGATCATACTTCTATGGAGAAGATGATGATGAGAGTAATCGAGGCAGTTGCAAATGGGGAAATAGCTTTTAAAGTCATGTAATGCTGTTGGAAGggagtgtgtttatttttgattcagatcttttatttttgattcTTGCTACTGTGTGATTTCTGTGCATGAGGTAAGAGTACTCTCTTGCTCATATCAGGGGAATGGCTGCTAGACTGGTCTCGTAAGATAACCATGCATTATTAAAGTCTGACcgatctttttcttttttgagttAATAAAGagcaggaaatatttttttttaagatttttttttcatgtaaatctcatgttatatataaaaaaatctatattttgttaacttcctgcaaaaaacaaaaaacatttaatagtcACCTGTACCAGATTGTGTATGATTGTATCCATGTGTTGACTGAAAGGTGTTTTAACATCAAGAGGGTTTGGGGTTTGTATTTCCAACACATCTTCAGAGATGAACATTTGGGTTCTTTAATCCAAAATGAAGATGCCAATACCAATTGTAATTGGTAAAGACTGTATATATTGTTagttaaaatctatttaaatattggaaaacaaatgtgtgttgcTGACAGGTATTCATTCTTAGATTGCTAAACTCCAAAGGATTGCGATGGCTCGAATCTATATCCACCATAAGAtggctgtgttggtttttgctAACCGGATCACTGGGAGCGCAAAGCTATAACTGGGATGTCATGTATAGGTGTTATGATTGCTTCACAGTTGATCATTGCTGACATAAATTGAAACCCATGCGCCAACAGTTTTATCTGCAGGAAATGTTTCCAGCGCTGCCggtgaaagaaattaaaaacataaagggAACTGTAATTCTCCGATCCTTTCCTGATATTCTGCTGCTAGTTTCTGTCATGAACACGAGACATGTAGAGATGCCTTTATTGCCAGGAGAATGGGGTCTTGATTTCAGCATTAGGTGAAGAAGAGTGCTGTGATTTACCACGAGGATAATACTAATCTTTCTTCTTGTTTgaagaattaataataataataataataataataataacagtatgcatatacatttatagtAATTGGGAAGCAAGATTAGATTAATTTGATAGCAATTccgattttttttaatcacttttgtGCTTTGAAActttagtatatattttatgataataTAATTGACAGAATATGAAAGTGATTTCTCATCGGCAGTGACAGCGATAGGATGTACATAATTCCTTTAATCTGCAAAATAATTTACCTTCCTTGAATAAGCAGTTCAATGTCACACTTAGAAAATGTACAACAAGATTATTCCAGAAGACAATAAGAAATCAATCATAAATTGCAATgcaatcaaatatttgaatttcaaagtaaaagggaaaaaaaaaaacaatcaaaaaatgttttagaaagtAAATGGCTATTTCAAACCAATGCACTTAAGTCAGCAAGGACAAAATcgcattttcacattttattattattatcattatttatatatgtatttatattttataaagattGCCAAACCCAATTCTGTCCAGGGGACAACACTGAGGAACATGTgacaacaaagacaaagactGTTGTGTTACGACTGAAAACTGAGTgattttaaacaattgtaatCTTAtcagaataattatttacagaaatTGTAACTCTTTTCTGAGAAATCCCTTTCCTAAGAGCACATTTATCTTtagaacaagaaagaaaaggcacaagTGCAGAATAGTAAAAAGCAATCTTTGAATAACACCTTAAGAGCCCTGGCTAAAtgcttcctgtttgtttcatatttctTATGACTGCACTCTTCTTATGCTTTTCCCAGTAAAGATTACATTGAGTCCCTAAACcctgtctgctgttttttcttattatacTATGTACCTGAATTGTAGGTGTTTAATAGATGCATGGAACAGGTGTTTTCATCTTCCCTCCTGCTACTGAAGCGCACCTCCTCATCTGAAG

Function

GO: NA

KEGG:

id description
K11793 CRBN; cereblon

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22237 lncRNA downstream 35856 43305773 ~ 43308614 (-) False AMCG00017060
TU22218 lncRNA downstream 63607 43280237 ~ 43280863 (-) False AMCG00017061
TU22214 lncRNA downstream 108434 43235805 ~ 43236036 (-) True G17910
TU22171 lncRNA downstream 370037 42966356 ~ 42974433 (-) True AMCG00017051
TU22024 lncRNA downstream 792697 42550325 ~ 42551773 (-) True G17754
TU22340 lncRNA upstream 268352 43633221 ~ 43633422 (-) True G18015
TU22342 lncRNA upstream 268901 43633770 ~ 43634422 (-) False AMCG00017067
TU22403 lncRNA upstream 472308 43837177 ~ 43891907 (-) True G18066
TU22443 lncRNA upstream 771319 44136188 ~ 44138542 (-) True G18101
TU22503 lncRNA upstream 1012128 44376997 ~ 44377221 (-) True G18156
AMCG00017060 mRNA downstream 35844 43305697 ~ 43308626 (-) True AMCG00017060
AMCG00017057 mRNA downstream 42662 43297944 ~ 43301808 (-) True AMCG00017057
AMCG00017058 mRNA downstream 48181 43291325 ~ 43296289 (-) True AMCG00017058
AMCG00017061 mRNA downstream 57867 43280420 ~ 43286603 (-) True AMCG00017061
AMCG00017064 mRNA downstream 73501 43155639 ~ 43270969 (-) True AMCG00017064
AMCG00017067 mRNA upstream 269427 43634296 ~ 43659602 (-) True AMCG00017067
AMCG00017075 mRNA upstream 492624 43857493 ~ 43872095 (-) True AMCG00017075
AMCG00017074 mRNA upstream 516409 43881278 ~ 43913423 (-) True AMCG00017074
AMCG00017077 mRNA upstream 737149 44102018 ~ 44125909 (-) True AMCG00017077
AMCG00017085 mRNA upstream 1091909 44456778 ~ 44458554 (-) True AMCG00017085
TU22128 other downstream 479854 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 2127239 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 5285531 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 5285531 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 5585999 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 5124258 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 8065986 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 8080718 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 8080718 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 8491377 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile