RNA id: AMCG00017060


Basic Information

Item Value
RNA id AMCG00017060
length 2372
RNA type mRNA
GC content 0.42
exon number 3
gene id AMCG00017060
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43305697 ~ 43308626 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCTTGAACCCCGCGTCAGAGGAGAGCTGAGAAACAAACAGTAGCCTCAGGAGATTTTTGGggaagaaacaacaaaatagaTCAAAATTCTTAGACAACGAGTAATGAACTGCGTATTTATTGGACAGCCGCCAGTTACCATTGGATAAGTTGGACGGATTTGCATCAGCTTTAAACGGAGCATGTCTCCAGCTGTGGTATACATAAAAGGTATCTGATGTAACTTAGTTTGATGTGTTTGTAAGAAACTTTACAGCAAGAGGCTTCGCTGTGTTTGCTCCGTAATGTGTCCCAGAGCAGACGACTTTCATCAGATCTAACTCTAAGCACACTTGCTATACCACACTGCGCTGCGCTGTCATGCCTCAGGAAGCCCCGGAGGGTCCCCTGCCTTTACTGAGATCCCTGAGCAGCGACACACCTGCCAATGTGATATTTTGTAACCGGAGCCCTTGCGTTGTGCGGCCCATCTGGATCAACTTCAAAGGCAGGCCGCAGCCGTATGACAGTCTGCAGCCTGGGACAGGGAGGCGCATGAAGACCTTCGTCACTCACCCTTGGCTGTTCAGAGACGCAGAGACGGATGAGCCACTGGCTGTGAATGGAAATGAGATGTTTGTCCCCACAGCAGCCCATAATACTCGGATGGTGTTGCTGCACATCACATTGCCAGTCTTCACGCTGAAAGAAAGGTGCCTGCAGGCTATCCGCCGTTTGGTCCGGCCTGAAGACTTCAGGAAGCTGGAGATTGCCAGGTGTCTCCACGAAGACCTGGAGGATCATCCTAGTGTGGAGAAAGACATGAAGCGAATTGCTCGCCGCATGGCCCAGCAGTTGCACGAGGAAAGAGAAGCCAGCAGCCACAGAGACTGGACTggatgaaaaacaatacaatacttaaaatattCTGTGCCGCAAAACAGACACTATGATGACAAGTTCCTAAAATGTATATCTTACAAAGACAATAGGGACAAGTGATCGCAACTGAAGATGTGGAACAAACCTTATCTGGTTAATCTTTTGACCCACTCTCTTCctattttgcaatatttaacCTAAAATCCAATCATTAGGAATGCTGTGAATGTGAGGTGCTAATTCTGCTGCTAGATCCTCATTGTTGTTTAAATGATCTGTGTGAACTGCATCGGAGTCAAACAAAGACCTTTtcgttattttaaataatgaagcaTTTTTCATAAAGAGCAATGGCGTATTGATACTGGTACGTTTACATAGAGAgacaaggaagaaaaaagaaaatggcagtAATCCACTGTGTCTAAAGTGAAGCATTCCTGCTTTGATTGTCTGCTGGGTGCCTACGTCATGCAGCACAGTGCAGCCATAACAATATTAGTCCTGTTTCTGGAATTTGAAagattttgtaatgtaaaaaaccCTTCAAGAACTTGGAACACCAATGTTTATTTCAGAGGTTTTAATAGCTTCCTCCAAGCCTTATAATAACTATGTTCGTGGTCTAGTGGTATGTGACAGTGGCTAGAAAAACGCTCATTCTCCCAGGCCACTGGAATGTGACCGAAGTTGTTCCCACATCTGCATTATGTATCGTCTCACTATATGACTTGTATGGGCTGTGATGTTAAACATGATCAATTTCATAATTTCAAACTGGGCATGCACAGGGTTTTAGAAACTCTTGACTCAAGCTCAAACAAAATTAGTtattgttaattcaattaatgtgCATTGTCAACCCAAATGTACACCCCTATCTGCAGTGGGGCACTATAGGGTAATCAAGCAATCATTTTTGGATGAttgcctccctctctgtgtgagAGGTGTCTAGGCATCTATATCGTCCTTGATTGCTGCTCATGGCAGATTGAGAGCGAGTGCTGCTGTAAAGAGTGATTGTGGGCTGCAGTTCAAGGTGAATTCGTTTCTGAAGATTTTGTAAATCCCACAGTCCTCTAGTGCAGCTGTAGTGTACTTGTAAGAGAAACTGATTGGTCTTTGTCACTCAAATCTCTTGTGTAGTTTTACTGTTAAGcaactgtatattaatttcctgtattagtatttttttattataacattCTAAAGGGTCTTACTGTATGTATCCAAGGTCATGTTTCAGAGAATATTGAGCATTCCGtgcatatatctatatatctatatagatatatagatatgcaCAGTATAAATGTTTGTGCTCACTCTAGCATTTGGTTTTTAAACACGTCAAACAGTTCTATTTAATGGTGATACAATGAGCATTTTGGAGCTGTATTTCTTTTACGTTTAGAATTAAATTGGTAAAACTAACCTTTTCTAAAGCATTTATTTCTCTTGTATTCGTGTGTGGGAttggaaatgcaaaatatttgacCAGGTTGCAG

Function

GO:

id name namespace
GO:0030947 regulation of vascular endothelial growth factor receptor signaling pathway biological_process
GO:0045765 regulation of angiogenesis biological_process
GO:0030218 erythrocyte differentiation biological_process

KEGG:

id description
K03871 VHL; von Hippel-Lindau disease tumor supressor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22218 lncRNA downstream 24834 43280237 ~ 43280863 (-) False AMCG00017061
TU22214 lncRNA downstream 69661 43235805 ~ 43236036 (-) True G17910
TU22171 lncRNA downstream 331264 42966356 ~ 42974433 (-) True AMCG00017051
TU22024 lncRNA downstream 753924 42550325 ~ 42551773 (-) True G17754
TU22026 lncRNA downstream 756279 42544360 ~ 42549418 (-) True G17755
TU22340 lncRNA upstream 324595 43633221 ~ 43633422 (-) True G18015
TU22342 lncRNA upstream 325144 43633770 ~ 43634422 (-) False AMCG00017067
TU22403 lncRNA upstream 528551 43837177 ~ 43891907 (-) True G18066
TU22443 lncRNA upstream 827562 44136188 ~ 44138542 (-) True G18101
TU22503 lncRNA upstream 1068371 44376997 ~ 44377221 (-) True G18156
AMCG00017057 mRNA downstream 3889 43297944 ~ 43301808 (-) True AMCG00017057
AMCG00017058 mRNA downstream 9408 43291325 ~ 43296289 (-) True AMCG00017058
AMCG00017061 mRNA downstream 19094 43280420 ~ 43286603 (-) True AMCG00017061
AMCG00017064 mRNA downstream 34728 43155639 ~ 43270969 (-) True AMCG00017064
AMCG00017062 mRNA downstream 150064 43131350 ~ 43155633 (-) True AMCG00017062
AMCG00017059 mRNA upstream 35844 43344470 ~ 43364869 (-) True AMCG00017059
AMCG00017067 mRNA upstream 325670 43634296 ~ 43659602 (-) True AMCG00017067
AMCG00017075 mRNA upstream 548867 43857493 ~ 43872095 (-) True AMCG00017075
AMCG00017074 mRNA upstream 572652 43881278 ~ 43913423 (-) True AMCG00017074
AMCG00017077 mRNA upstream 793392 44102018 ~ 44125909 (-) True AMCG00017077
TU22128 other downstream 441081 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 2088466 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 5246758 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 5246758 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 5547226 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 5180501 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 8122229 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 8136961 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 8136961 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 8547620 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile