RNA id: AMCG00017061


Basic Information

Item Value
RNA id AMCG00017061
length 2594
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00017061
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43280237 ~ 43286603 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGGTGTATGCTGGGAGTCTCTGACCTCACCAATATGGCGGACTGGTAGAGGAAGAGCCATTTCCCCAAGTCTATTTTAccttatttcttttaaaatggataagaaaaaaaagttatatgaCGTGACAGCTGCTTCGCTGGTGGACCTGAAGGCTGAGCTCTACAGGAAGCAAGaagcatttaaacatgaaaagttAGTGAAAGATGCAGGAGCTCCACTGAAAACCAAGGTCACCAACAAGAAACCCACTATCTGGAGTAAACAGAATGAGGGGGTTACGTCCAGAGCACAGAAAGATGTGGAGCAAACAAGTGAAGAGGAAAATACTCTGGACAAGGCAAAACGCAGACTTGAAGAGAAGGCCAAGCTCTATGATCAAATGACCAAAGGAGACTTTCCAGATGAAGAAACAGAAAGTTTGTTCCTGGTGGATTTCACCCAGAAGATCATTGACCAGAAGAAGGAGGTCTGGGCGCGATGTGAGAGAGAAGCTACAGTGAggaatgcagagagagaggaggaagagagtgCTGTAGGAGACGCTCCCATTCCTCCCCCTGAAAACCCTGACGAGGAATGggtGGACTATGTTGATGCTCTTGGTAGATCCAGGAGATGCTTGAAGAAAGATTTGCCAGGATTTCTGAAAATGGACAAAGAGTTGCATGGCAAGAGGGGGGAGACAGTGGGAAAGACGCTGCTATCGGAGGACATGCGCCGTGAGCTGCAGCGGcaggagtgggagagggaggaggaggaggccatGAAGAAGCCTGTCGGCCCGCTGCATTATGAAGACATCCGGGAAAGAGAGGCCCGGGATCTTGGTGTGGGTTACTTTGCCTTTGCGCAAGACGAGGCTCTCCGACAAAAGCAAAGGGATACTCTGGACATGCTGAGAGACCAGaCCATGGGTCAGAGAACCAAGCGAGAGCAGTTAAAAGACAAACGGAAGGCCTTGTTGGAAGCCCGACTAGCAAAGGTGCGTCagaggaagatgaagaagatGAAGCTAGATGGGACAGAAGAAGAGGTGGCAGCAGAAGATAAAGAAGtggaagaagaagAGACCATTGGGCCTGTGCCTGTGCCGGAGCCGCACTCTGAGGAGCTGATCCCTGTGTCCACCAGGAAgaaggtggaggtggaggtccAGCAGAGGAAGGACACTAAGGCTGGGGTACCCCACGTGCGCGAGTGGGATAGAGGGAAAGAGTTCACCTTTGGTCAGTGGTCTAGCAGGCGAAGGGAGGAGCGCGAGGAAGAATTTGCACCTCCTACTGAGTACTTCAACGACTATAAGAAACCCAGCCTGGGGCTGAACTGGAACAAAAGCaagcagaaatatatttttcaagggTCAGAGAGGCAGAATTCTGGAAGCAGTGGCCAATTCAGTCCTGCAGCTCAATCACAATCACAGACACAGTCCCAGACTCCTCCCCAGCAACAGAGTCTTGATGACTTGCTGGCTTTTTACAAACAGTCATCTTGAGCAGTCAGTCCGTGCCGCTCTACAGAAGATGCAGGAGGAACAGCTGGCTCCCGGCAGCTGCCTCGTCTGACtcccacagtgcagtgcaattcTAAGTTGTCACCCACAGAGTAGGCAAGGCACATCAccaatgttaatgtttttagttttttgtgctGCCCTAGATGTACTTTCAGCAGGTTTGTGTATTTACCAAGGTTTCTGATGTTTTATATAAGATGCTAAAAGGAATTGTATCGATCATATTTGGCAATGTTTGCCTGTTTCTACAGATTTCACTGCATTAGGGACAAAGTGATTGTATTACATAAATGGGTTACCTGCTGAATTCTTGTTTGAATTAAATCATTATCAGAACCATCACTTTTTCTTAATCCTTTTGGCTGCACTTCAGTTTGAATAACAATGTTATGTATATCCTTTGAAGAccttttaatttatatgttaACAATGTTAAATTCTGGTCCCAATCAATTTGTTTATCATTGCACCCCGACTTGTAGAAATGAAAGATCCATATTGAGAGTTTGCTCTGCTGACTCTCCTGTCAATATCTTGTCTAACGCTGGTAATACAATAAGAGAGATCCATGAGACTGTTTGGGAGAAGGATGTTCAGCACTGTTAGTTGCTGAATCTGCTTAATTCTGCAGGTAGGATTTCACCCACAAAACTAACATTTGCAACATTGCCGACTATTACAGCTttctcaatatatttttttcagtagaTCACTGTTTGTTTCCCCTTGCATAGTTATGCAAATTAAGAAGTCTGTCATCCCATCATATTGGCTAAACCTTTTTCACTTTCCTCACTCGAGAGATCATTCTAGTCTCCAAGGAGCAGCAGAAAAGACCTTGTGTAATTTGTCCTCAAAATGTAGAAGGCTGGGTAACTGTAAATAGGCAATCTGCATGCGGCTGAGAGTATtgacacccttcatttgaaacttaAGTTAGTAATTATTTGTCAGCTATAACTCCCCACCCCCTCATTTTCCCTCTTCCTTAAAGGACATGAGctattttcaattcaatattgTCACTCACGTtgtactaatactactactaatacatgTTTTGCATGTGTGGTAAG

Function

GO: NA

KEGG:

id description
K25178 CCDC174; coiled-coil domain-containing protein 174

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22214 lncRNA downstream 44384 43235805 ~ 43236036 (-) True G17910
TU22171 lncRNA downstream 305987 42966356 ~ 42974433 (-) True AMCG00017051
TU22024 lncRNA downstream 728647 42550325 ~ 42551773 (-) True G17754
TU22026 lncRNA downstream 731002 42544360 ~ 42549418 (-) True G17755
TU21787 lncRNA downstream 1341886 41936926 ~ 41938534 (-) True AMCG00017014
TU22237 lncRNA upstream 19170 43305773 ~ 43308614 (-) False AMCG00017060
TU22340 lncRNA upstream 346618 43633221 ~ 43633422 (-) True G18015
TU22342 lncRNA upstream 347167 43633770 ~ 43634422 (-) False AMCG00017067
TU22403 lncRNA upstream 550574 43837177 ~ 43891907 (-) True G18066
TU22443 lncRNA upstream 849585 44136188 ~ 44138542 (-) True G18101
AMCG00017064 mRNA downstream 9451 43155639 ~ 43270969 (-) True AMCG00017064
AMCG00017062 mRNA downstream 124787 43131350 ~ 43155633 (-) True AMCG00017062
AMCG00017063 mRNA downstream 151754 43127256 ~ 43128666 (-) True AMCG00017063
AMCG00017052 mRNA downstream 278488 43000826 ~ 43001932 (-) True AMCG00017052
AMCG00017051 mRNA downstream 306104 42948991 ~ 42974316 (-) False AMCG00017051
AMCG00017058 mRNA upstream 4722 43291325 ~ 43296289 (-) True AMCG00017058
AMCG00017057 mRNA upstream 11341 43297944 ~ 43301808 (-) True AMCG00017057
AMCG00017060 mRNA upstream 19094 43305697 ~ 43308626 (-) True AMCG00017060
AMCG00017059 mRNA upstream 57867 43344470 ~ 43364869 (-) True AMCG00017059
AMCG00017067 mRNA upstream 347693 43634296 ~ 43659602 (-) True AMCG00017067
TU22128 other downstream 415804 42808711 ~ 42864616 (-) True G17842
TU21619 other downstream 2063189 41216651 ~ 41217231 (-) True G17421
TU21144 other downstream 5221481 38027483 ~ 38058939 (-) False AMCG00016959
TU21143 other downstream 5221481 38054665 ~ 38058939 (-) False AMCG00016959
TU21119 other downstream 5521949 37758157 ~ 37758471 (-) True G17032
TU23267 other upstream 5202524 48489127 ~ 48494349 (-) True AMCG00017158
TU23976 other upstream 8144252 51430855 ~ 51435068 (-) False AMCG00017234
TU23984 other upstream 8158984 51445587 ~ 51449786 (-) True G19335
TU23985 other upstream 8158984 51445587 ~ 51449786 (-) False G19335
TU24132 other upstream 8569643 51856246 ~ 51860142 (-) False AMCG00017251

Expression Profile